SRR40493020 · Gut microbiome

Metagenome or environmental sample from gut metagenome

not started

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Saved public metadata

{
  "run_accession": "SRR40493020",
  "study_accession": "PRJNA1522604",
  "sample_accession": "SAMN62901127",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "MinION",
  "library_strategy": "AMPLICON",
  "library_source": "GENOMIC",
  "library_selection": "PCR",
  "read_count": "4104",
  "base_count": "6257064",
  "fastq_bytes": "5756629",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR404/020/SRR40493020/SRR40493020_1.fastq.gz",
  "sample_title": "Metagenome or environmental sample from gut metagenome",
  "scientific_name": "gut metagenome"
}

Public files

SRR40493020_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "not_started",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": null,
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": null,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {},
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}