SRR29289440 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella nigrescens | Prevotella | 20.2490 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.4007 |
| Blautia faecis | Blautia | 8.5329 |
| Bacteroides thetaiotaomicron | Bacteroides | 7.3181 |
| Prevotella copri | Prevotella | 5.7415 |
| Blautia producta | Blautia | 5.5442 |
| Prevotella intermedia | Prevotella | 4.9281 |
| Prevotella melaninogenica | Prevotella | 3.6764 |
| Bacteroides ovatus | Bacteroides | 3.1060 |
| Roseburia intestinalis | Roseburia | 2.6231 |
| Prevotella ruminicola | Prevotella | 2.2510 |
| Prevotella jejuni | Prevotella | 2.1131 |
| Prevotella brevis | Prevotella | 1.8889 |
| Blautia hansenii | Blautia | 1.7434 |
| Dialister propionicifaciens | Dialister | 1.6311 |
| Blautia luti | Blautia | 1.6010 |
| Bacteroides timonensis | Bacteroides | 1.4790 |
| Roseburia hominis | Roseburia | 1.2079 |
| Bacteroides stercoris | Bacteroides | 1.2052 |
| Akkermansia muciniphila | Akkermansia | 1.1920 |
| Bacteroides fragilis | Bacteroides | 1.0379 |
| Prevotella oris | Prevotella | 1.0298 |
| Prevotella oryzae | Prevotella | 1.0084 |
| Prevotella bryantii | Prevotella | 0.8426 |
| Collinsella aerofaciens | Collinsella | 0.8365 |
| Bacteroides cellulosilyticus | Bacteroides | 0.7200 |
| Bacteroides uniformis | Bacteroides | 0.7141 |
| Bacteroides zoogleoformans | Bacteroides | 0.6770 |
| Prevotella nanceiensis | Prevotella | 0.6348 |
| Prevotella paludivivens | Prevotella | 0.6055 |
| Bacteroides xylanisolvens | Bacteroides | 0.6034 |
| Blautia obeum | Blautia | 0.5856 |
| Agathobaculum butyriciproducens | Agathobaculum | 0.2719 |
Saved public metadata
{
"run_accession": "SRR29289440",
"study_accession": "PRJNA1120247",
"sample_accession": "SAMN41685882",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "14756",
"base_count": "29754737",
"fastq_bytes": "29554882",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/040/SRR29289440/SRR29289440_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "519342f84de83e3873c535b7449494dea2d6c0b14f9f79dcdcc4ceae8184f5ab",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1588.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14756,
"reads_skipped": 9862,
"elapsed_seconds": 1.1837886479997906,
"reads_submitted": 14756,
"reads_after_filter": 14756,
"adapter_scan": {
"sampled": 200,
"matched": 179,
"fraction": 0.895,
"adapters_found": {
"27F": 49,
"BC_FLANK": 130
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}