SRR29289431 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella nigrescens | Prevotella | 18.3999 |
| Prevotella melaninogenica | Prevotella | 10.5717 |
| Bacteroides thetaiotaomicron | Bacteroides | 9.1350 |
| Bacteroides ovatus | Bacteroides | 6.4916 |
| Faecalibacterium prausnitzii | Faecalibacterium | 5.3314 |
| Prevotella intermedia | Prevotella | 5.2076 |
| Prevotella ruminicola | Prevotella | 4.7603 |
| Prevotella jejuni | Prevotella | 4.7490 |
| Prevotella copri | Prevotella | 4.1656 |
| Bacteroides fragilis | Bacteroides | 3.1692 |
| Phocaeicola vulgatus | Phocaeicola | 2.5922 |
| Bacteroides timonensis | Bacteroides | 2.0718 |
| Blautia producta | Blautia | 1.7227 |
| Prevotella oryzae | Prevotella | 1.6626 |
| Bacteroides zoogleoformans | Bacteroides | 1.5438 |
| Prevotella brevis | Prevotella | 1.5408 |
| Collinsella aerofaciens | Collinsella | 1.4674 |
| Prevotella bryantii | Prevotella | 1.3699 |
| Prevotella oris | Prevotella | 1.3421 |
| Blautia faecis | Blautia | 1.3057 |
| Bacteroides cellulosilyticus | Bacteroides | 1.2745 |
| Phocaeicola dorei | Phocaeicola | 1.2244 |
| Prevotella denticola | Prevotella | 1.0006 |
| Prevotella heparinolytica | Prevotella | 0.8551 |
| Prevotella corporis | Prevotella | 0.7966 |
| Phocaeicola sartorii | Phocaeicola | 0.7013 |
| Bacteroides stercoris | Bacteroides | 0.6868 |
| Prevotella veroralis | Prevotella | 0.6410 |
| Bacteroides xylanisolvens | Bacteroides | 0.4870 |
| Bacteroides uniformis | Bacteroides | 0.4764 |
| Blautia hansenii | Blautia | 0.4688 |
| Dialister hominis | Dialister | 0.4402 |
| Prevotella nanceiensis | Prevotella | 0.3863 |
| Dialister propionicifaciens | Dialister | 0.3668 |
| Bacteroides helcogenes | Bacteroides | 0.3468 |
| Bacteroides intestinalis | Bacteroides | 0.3238 |
| Prevotella paludivivens | Prevotella | 0.3103 |
| Prevotella dentalis | Prevotella | 0.3081 |
| Prevotella enoeca | Prevotella | 0.3049 |
Saved public metadata
{
"run_accession": "SRR29289431",
"study_accession": "PRJNA1120247",
"sample_accession": "SAMN41685890",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "16520",
"base_count": "28967970",
"fastq_bytes": "28607299",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/031/SRR29289431/SRR29289431_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "1d30a662c8152b8bef44e836a0df90cb5fdb9f0a92ef122cef7b2b27a2618f04",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1570.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 16520,
"reads_skipped": 8297,
"elapsed_seconds": 1.459755671000039,
"reads_submitted": 16520,
"reads_after_filter": 16520,
"adapter_scan": {
"sampled": 200,
"matched": 167,
"fraction": 0.835,
"adapters_found": {
"BC_FLANK": 138,
"27F": 29
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}