SRR29289430 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella nigrescens | Prevotella | 33.9973 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.0180 |
| Prevotella copri | Prevotella | 11.7064 |
| Ruminococcus champanellensis | Ruminococcus | 4.7174 |
| Streptococcus salivarius | Streptococcus | 2.8959 |
| Prevotella melaninogenica | Prevotella | 2.6855 |
| Prevotella oryzae | Prevotella | 2.6533 |
| Prevotella jejuni | Prevotella | 2.4494 |
| Ruminococcus callidus | Ruminococcus | 2.2233 |
| Prevotella intermedia | Prevotella | 1.9945 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.8211 |
| Dialister propionicifaciens | Dialister | 1.7942 |
| Eshraghiella crossota | Eshraghiella | 1.7702 |
| Streptococcus downei | Streptococcus | 1.6232 |
| Ruminococcus flavefaciens | Ruminococcus | 1.0716 |
| Dialister hominis | Dialister | 1.0252 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.0156 |
| Prevotella bryantii | Prevotella | 0.9350 |
| Ruminococcus bromii | Ruminococcus | 0.9267 |
| Prevotella brevis | Prevotella | 0.7661 |
| Prevotella veroralis | Prevotella | 0.7455 |
| Prevotella oris | Prevotella | 0.7360 |
| Phocaeicola sartorii | Phocaeicola | 0.7020 |
| Phocaeicola vulgatus | Phocaeicola | 0.7012 |
| Dorea longicatena | Dorea | 0.6983 |
| Prevotella heparinolytica | Prevotella | 0.6845 |
| Prevotella paludivivens | Prevotella | 0.6437 |
| Prevotella histicola | Prevotella | 0.6311 |
| Hominimerdicola alba | Hominimerdicola | 0.6265 |
| Hominimerdicola aceti | Hominimerdicola | 0.5049 |
| Alistipes inops | Alistipes | 0.4777 |
| Prevotella nanceiensis | Prevotella | 0.4728 |
| Ruminococcus gauvreauii | Ruminococcus | 0.4599 |
| Prevotella ruminicola | Prevotella | 0.4294 |
| Prevotella denticola | Prevotella | 0.4050 |
| Ligilactobacillus ruminis | Ligilactobacillus | 0.3642 |
| Agathobacter ruminis | Agathobacter | 0.3442 |
| Dorea formicigenerans | Dorea | 0.2833 |
Saved public metadata
{
"run_accession": "SRR29289430",
"study_accession": "PRJNA1120247",
"sample_accession": "SAMN41685818",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "PCR",
"read_count": "11417",
"base_count": "22380944",
"fastq_bytes": "19243056",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR292/030/SRR29289430/SRR29289430_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b187aed479a1e54fae653fc5ada7f3d68ab7f5c84e90e9443a53ccaea5a357c8",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1587,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 11417,
"reads_skipped": 3826,
"elapsed_seconds": 1.2390381850000267,
"reads_submitted": 11417,
"reads_after_filter": 11417,
"adapter_scan": {
"sampled": 200,
"matched": 191,
"fraction": 0.955,
"adapters_found": {
"BC_FLANK": 76,
"27F": 114,
"1492R_rc": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}