SRR27892114 · Gut microbiome
HH94
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Acidaminococcus intestini | Acidaminococcus | 15.3779 |
| Collinsella aerofaciens | Collinsella | 13.7228 |
| Acidaminococcus fermentans | Acidaminococcus | 9.8810 |
| Faecalibacterium prausnitzii | Faecalibacterium | 6.5161 |
| Bifidobacterium longum | Bifidobacterium | 5.9226 |
| Collinsella stercoris | Collinsella | 5.0966 |
| Dorea longicatena | Dorea | 3.7388 |
| Dorea formicigenerans | Dorea | 2.8963 |
| Subdoligranulum variabile | Subdoligranulum | 2.5945 |
| Allocoprococcus comes | Allocoprococcus | 2.4399 |
| Gemmiger formicilis | Gemmiger | 2.4218 |
| Bifidobacterium bohemicum | Bifidobacterium | 2.3197 |
| Flavonifractor plautii | Flavonifractor | 2.2995 |
| Bifidobacterium animalis | Bifidobacterium | 2.0896 |
| Bifidobacterium pseudocatenulatum | Bifidobacterium | 1.7908 |
| Parabacteroides merdae | Parabacteroides | 1.6890 |
| Bifidobacterium adolescentis | Bifidobacterium | 1.6786 |
| Blautia faecis | Blautia | 1.4732 |
| Parabacteroides distasonis | Parabacteroides | 1.4565 |
| Collinsella intestinalis | Collinsella | 1.4298 |
| Roseburia intestinalis | Roseburia | 1.3165 |
| Bifidobacterium actinocoloniiforme | Bifidobacterium | 1.1382 |
| Collinsella tanakaei | Collinsella | 1.1324 |
| Bifidobacterium rousetti | Bifidobacterium | 1.0109 |
| Bifidobacterium catenulatum | Bifidobacterium | 0.9536 |
| Phocaeicola sartorii | Phocaeicola | 0.9303 |
| Blautia luti | Blautia | 0.9228 |
| Blautia producta | Blautia | 0.9205 |
| Phocaeicola vulgatus | Phocaeicola | 0.8837 |
| Collinsella bouchesdurhonensis | Collinsella | 0.8232 |
| Parabacteroides goldsteinii | Parabacteroides | 0.8154 |
| Bifidobacterium bifidum | Bifidobacterium | 0.7549 |
| Bifidobacterium indicum | Bifidobacterium | 0.7303 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.4223 |
| Bifidobacterium thermophilum | Bifidobacterium | 0.4100 |
Saved public metadata
{
"run_accession": "SRR27892114",
"study_accession": "PRJNA1073957",
"sample_accession": "SAMN39846406",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "7009",
"base_count": "10756630",
"fastq_bytes": "9022477",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR278/014/SRR27892114/SRR27892114_1.fastq.gz",
"sample_title": "HH94",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "f4fa2b34958326c93c2d1c021e2721b415a8663854ad9ab9193dc1b079e18948",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1537,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 7009,
"reads_skipped": 1202,
"elapsed_seconds": 0.6862783120000131,
"reads_submitted": 7009,
"reads_after_filter": 7009,
"adapter_scan": {
"sampled": 200,
"matched": 4,
"fraction": 0.02,
"adapters_found": {
"27F": 4
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}