SRR27892112 · Gut microbiome
GI29
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 13.7324 |
| Bacteroides thetaiotaomicron | Bacteroides | 10.0780 |
| Subdoligranulum variabile | Subdoligranulum | 5.8558 |
| Gemmiger formicilis | Gemmiger | 5.7592 |
| Collinsella aerofaciens | Collinsella | 5.3250 |
| Blautia faecis | Blautia | 4.9394 |
| Phocaeicola dorei | Phocaeicola | 3.7779 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 3.7439 |
| Bacteroides uniformis | Bacteroides | 3.4799 |
| Collinsella stercoris | Collinsella | 2.5888 |
| Blautia luti | Blautia | 2.5709 |
| Phocaeicola vulgatus | Phocaeicola | 2.5538 |
| Bacteroides zoogleoformans | Bacteroides | 2.5507 |
| Blautia producta | Blautia | 2.4288 |
| Dorea longicatena | Dorea | 2.4075 |
| Anaerostipes hadrus | Anaerostipes | 2.3634 |
| Dorea formicigenerans | Dorea | 2.3187 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.1545 |
| Phocaeicola sartorii | Phocaeicola | 2.1372 |
| Coprococcus eutactus | Coprococcus | 1.5704 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 1.5256 |
| Anaerostipes butyraticus | Anaerostipes | 1.4443 |
| Intestinimonas butyriciproducens | Intestinimonas | 1.3491 |
| Phocaeicola massiliensis | Phocaeicola | 1.2821 |
| Bacteroides fragilis | Bacteroides | 1.1377 |
| Bacteroides ovatus | Bacteroides | 1.1339 |
| Blautia hansenii | Blautia | 1.0297 |
| Parabacteroides merdae | Parabacteroides | 1.0211 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.9989 |
| Bacteroides timonensis | Bacteroides | 0.9653 |
| Agathobaculum butyriciproducens | Agathobaculum | 0.8774 |
| Blautia glucerasea | Blautia | 0.7105 |
| Collinsella intestinalis | Collinsella | 0.6565 |
| Bacteroides stercoris | Bacteroides | 0.5988 |
| Pseudocoprococcus catus | Pseudocoprococcus | 0.5956 |
| Collinsella tanakaei | Collinsella | 0.5768 |
| Agathobaculum desmolans | Agathobaculum | 0.5691 |
| Dialister propionicifaciens | Dialister | 0.4893 |
| Bacteroides eggerthii | Bacteroides | 0.4472 |
| Negativibacillus massiliensis | Negativibacillus | 0.2553 |
Saved public metadata
{
"run_accession": "SRR27892112",
"study_accession": "PRJNA1073957",
"sample_accession": "SAMN39846398",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "GENOMIC",
"library_selection": "PCR",
"read_count": "8774",
"base_count": "13440911",
"fastq_bytes": "11341541",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR278/012/SRR27892112/SRR27892112_1.fastq.gz",
"sample_title": "GI29",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "08843c7edf0dd7e31690feae9597ce681b6d878dd6221052c46b2794ed315e21",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1536.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 8774,
"reads_skipped": 3920,
"elapsed_seconds": 0.9960594780000012,
"reads_submitted": 8774,
"reads_after_filter": 8774,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}