SRR27278338 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 36.9940 |
| Faecalibacterium prausnitzii | Faecalibacterium | 10.7925 |
| Bacteroides caecicola | Bacteroides | 6.1977 |
| Bacteroides helcogenes | Bacteroides | 5.2470 |
| Blautia producta | Blautia | 4.6311 |
| Blautia glucerasea | Blautia | 2.9756 |
| Massilistercora timonensis | Massilistercora | 2.9677 |
| Romboutsia timonensis | Romboutsia | 2.7280 |
| Bacteroides fluxus | Bacteroides | 2.4746 |
| Allofournierella massiliensis | Allofournierella | 2.2157 |
| Mordavella massiliensis | Mordavella | 1.6361 |
| Bacteroides gallinaceus | Bacteroides | 1.4667 |
| Dysosmobacter welbionis | Dysosmobacter | 1.3388 |
| Flavonifractor plautii | Flavonifractor | 1.3145 |
| Peptococcus niger | Peptococcus | 1.3085 |
| Neglectibacter timonensis | Neglectibacter | 1.2158 |
| Enterococcus cecorum | Enterococcus | 1.1025 |
| Blautia hansenii | Blautia | 1.0558 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.0056 |
| Collinsella tanakaei | Collinsella | 0.8754 |
| Bacteroides zoogleoformans | Bacteroides | 0.7761 |
| Collinsella aerofaciens | Collinsella | 0.7757 |
| Bacteroides eggerthii | Bacteroides | 0.7287 |
| Phocaeicola coprophilus | Phocaeicola | 0.7251 |
| Alistipes dispar | Alistipes | 0.7149 |
| Negativibacillus massiliensis | Negativibacillus | 0.7142 |
| Bacteroides cellulosilyticus | Bacteroides | 0.6655 |
| Christensenella minuta | Christensenella | 0.5937 |
| Phocaeicola salanitronis | Phocaeicola | 0.5815 |
| Romboutsia lituseburensis | Romboutsia | 0.5693 |
| Bacteroides uniformis | Bacteroides | 0.5382 |
| Collinsella stercoris | Collinsella | 0.4691 |
| Alistipes megaguti | Alistipes | 0.4603 |
| Romboutsia ilealis | Romboutsia | 0.4585 |
| Phocaeicola coprocola | Phocaeicola | 0.4016 |
| Eubacterium limosum | Eubacterium | 0.3756 |
| Olsenella timonensis | Olsenella | 0.3513 |
| Ligilactobacillus agilis | Ligilactobacillus | 0.3150 |
| Lactobacillus crispatus | Lactobacillus | 0.2423 |
Saved public metadata
{
"run_accession": "SRR27278338",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915837",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14943",
"base_count": "21732387",
"fastq_bytes": "18309318",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/038/SRR27278338/SRR27278338_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "ef038d8428bda81b9df1fedb67b68965870f835f8f19a5eaf184cce2a4876e91",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1481,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14943,
"reads_skipped": 6480,
"elapsed_seconds": 1.180562947999988,
"reads_submitted": 14943,
"reads_after_filter": 14943,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}