SRR27278329 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Phascolarctobacterium faecium | Phascolarctobacterium | 22.5749 |
| Muribaculum intestinale | Muribaculum | 15.3506 |
| Barnesiella viscericola | Barnesiella | 10.2486 |
| Blautia producta | Blautia | 8.4085 |
| Faecalibacterium prausnitzii | Faecalibacterium | 8.0405 |
| Phocaeicola salanitronis | Phocaeicola | 4.5166 |
| Massilistercora timonensis | Massilistercora | 4.2458 |
| Mordavella massiliensis | Mordavella | 3.2183 |
| Blautia glucerasea | Blautia | 3.0815 |
| Marseilla massiliensis | Marseilla | 2.5963 |
| Blautia hansenii | Blautia | 2.1615 |
| Desulfovibrio piger | Desulfovibrio | 2.1240 |
| Megasphaera stantonii | Megasphaera | 1.9530 |
| Alistipes megaguti | Alistipes | 1.5487 |
| Ruminococcus champanellensis | Ruminococcus | 0.9835 |
| Romboutsia timonensis | Romboutsia | 0.9551 |
| Neglectibacter timonensis | Neglectibacter | 0.9551 |
| Alistipes dispar | Alistipes | 0.7263 |
| Peptococcus niger | Peptococcus | 0.6985 |
| Olsenella timonensis | Olsenella | 0.6985 |
| Phocaeicola plebeius | Phocaeicola | 0.6847 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.5907 |
| Negativibacillus massiliensis | Negativibacillus | 0.5270 |
| Staphylococcus kloosii | Staphylococcus | 0.4847 |
| Acidaminococcus fermentans | Acidaminococcus | 0.4695 |
| Phocaeicola coprophilus | Phocaeicola | 0.4592 |
| Alistipes putredinis | Alistipes | 0.4049 |
| Blautia marasmi | Blautia | 0.3526 |
| Agathobaculum desmolans | Agathobaculum | 0.2851 |
| Staphylococcus aureus | Staphylococcus | 0.2566 |
| Monoglobus pectinilyticus | Monoglobus | 0.2138 |
| Lactobacillus crispatus | Lactobacillus | 0.1853 |
Saved public metadata
{
"run_accession": "SRR27278329",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915845",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17201",
"base_count": "25046030",
"fastq_bytes": "21860795",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/029/SRR27278329/SRR27278329_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "28c08af6f5f1bef0da47273fd14fbee51399b14663cef940d11ef970e09de6b4",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17201,
"reads_skipped": 10068,
"elapsed_seconds": 1.2345403780000197,
"reads_submitted": 17201,
"reads_after_filter": 17201,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}