SRR27278326 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Enterococcus cecorum | Enterococcus | 38.0423 |
| Enterococcus faecium | Enterococcus | 12.0260 |
| Lactobacillus johnsonii | Lactobacillus | 6.2440 |
| Escherichia coli | Escherichia | 6.1753 |
| Romboutsia timonensis | Romboutsia | 5.8717 |
| Staphylococcus aureus | Staphylococcus | 4.9833 |
| Enterococcus avium | Enterococcus | 3.0293 |
| Staphylococcus kloosii | Staphylococcus | 2.8988 |
| Romboutsia lituseburensis | Romboutsia | 2.6759 |
| Staphylococcus cohnii | Staphylococcus | 1.9170 |
| Staphylococcus arlettae | Staphylococcus | 1.9048 |
| Enterococcus columbae | Enterococcus | 1.7139 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.5938 |
| Veillonella ratti | Veillonella | 1.3167 |
| Lactobacillus crispatus | Lactobacillus | 1.1010 |
| Staphylococcus saprophyticus | Staphylococcus | 1.0981 |
| Romboutsia ilealis | Romboutsia | 0.8768 |
| Lactobacillus acetotolerans | Lactobacillus | 0.7563 |
| Enterococcus gallinarum | Enterococcus | 0.7438 |
| Bacillus cytotoxicus | Bacillus | 0.7160 |
| Lactobacillus helveticus | Lactobacillus | 0.6900 |
| Shigella sonnei | Shigella | 0.4082 |
| Staphylococcus xylosus | Staphylococcus | 0.4037 |
| Enterococcus hirae | Enterococcus | 0.3920 |
| Staphylococcus pseudintermedius | Staphylococcus | 0.3466 |
| Bacillus cereus | Bacillus | 0.3414 |
| Lactobacillus delbrueckii | Lactobacillus | 0.3344 |
| Staphylococcus succinus | Staphylococcus | 0.3309 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.3002 |
| Romboutsia sedimentorum | Romboutsia | 0.2776 |
| Bacillus thuringiensis | Bacillus | 0.2709 |
| Clostridium saudiense | Clostridium | 0.2195 |
Saved public metadata
{
"run_accession": "SRR27278326",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915848",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "10089",
"base_count": "13528935",
"fastq_bytes": "10896602",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/026/SRR27278326/SRR27278326_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3fb5899eacd82f69782372abef9a84e0ca849714bb33a4fb8024e97e02bd4c80",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1494,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 10089,
"reads_skipped": 1252,
"elapsed_seconds": 1.7312346150001758,
"reads_submitted": 10089,
"reads_after_filter": 10089,
"adapter_scan": {
"sampled": 200,
"matched": 7,
"fraction": 0.035,
"adapters_found": {
"BC_FLANK": 7
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}