SRR27278324 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 26.5855 |
| Bacteroides caecicola | Bacteroides | 18.3271 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.2952 |
| Bacteroides helcogenes | Bacteroides | 5.0825 |
| Bacteroides zoogleoformans | Bacteroides | 3.9434 |
| Massilistercora timonensis | Massilistercora | 3.1430 |
| Blautia producta | Blautia | 2.6300 |
| Romboutsia timonensis | Romboutsia | 2.4292 |
| Collinsella aerofaciens | Collinsella | 2.1781 |
| Bacteroides fluxus | Bacteroides | 2.1207 |
| Collinsella tanakaei | Collinsella | 1.8297 |
| Enorma phocaeensis | Enorma | 1.3957 |
| Bacteroides uniformis | Bacteroides | 1.2926 |
| Mordavella massiliensis | Mordavella | 1.2140 |
| Bacteroides gallinaceus | Bacteroides | 1.2092 |
| Desulfovibrio piger | Desulfovibrio | 1.1819 |
| Blautia hansenii | Blautia | 1.1562 |
| Peptococcus niger | Peptococcus | 1.0231 |
| Collinsella stercoris | Collinsella | 1.0078 |
| Romboutsia lituseburensis | Romboutsia | 1.0056 |
| Bacteroides cellulosilyticus | Bacteroides | 0.9734 |
| Bacteroides mediterraneensis | Bacteroides | 0.8493 |
| Enterococcus cecorum | Enterococcus | 0.8114 |
| Alistipes dispar | Alistipes | 0.7605 |
| Neglectibacter timonensis | Neglectibacter | 0.7232 |
| Blautia glucerasea | Blautia | 0.6767 |
| Alistipes megaguti | Alistipes | 0.6067 |
| Alistipes putredinis | Alistipes | 0.5908 |
| Bacteroides ovatus | Bacteroides | 0.5741 |
| Gemmiger formicilis | Gemmiger | 0.5113 |
| Collinsella intestinalis | Collinsella | 0.5034 |
| Bacteroides eggerthii | Bacteroides | 0.4992 |
| Romboutsia ilealis | Romboutsia | 0.3754 |
| Agathobaculum desmolans | Agathobaculum | 0.2999 |
| Staphylococcus aureus | Staphylococcus | 0.1940 |
Saved public metadata
{
"run_accession": "SRR27278324",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915850",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "12769",
"base_count": "16888540",
"fastq_bytes": "14508695",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/024/SRR27278324/SRR27278324_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "415b1c78b49a27c58643597608e7271277d80d98b421b1d0f80276bf7a897274",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1470,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12769,
"reads_skipped": 7027,
"elapsed_seconds": 1.1499721479999607,
"reads_submitted": 12769,
"reads_after_filter": 12769,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}