SRR27278322 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Romboutsia timonensis | Romboutsia | 44.2289 |
| Romboutsia lituseburensis | Romboutsia | 13.9129 |
| Turicibacter sanguinis | Turicibacter | 10.2347 |
| Romboutsia ilealis | Romboutsia | 6.8926 |
| Phocaeicola salanitronis | Phocaeicola | 3.9421 |
| Helicobacter pullorum | Helicobacter | 3.6609 |
| Mucispirillum schaedleri | Mucispirillum | 2.3054 |
| Clostridium saudiense | Clostridium | 1.7351 |
| Faecalibacterium prausnitzii | Faecalibacterium | 1.7259 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.2597 |
| Desulfovibrio piger | Desulfovibrio | 1.1994 |
| Romboutsia sedimentorum | Romboutsia | 0.9445 |
| Helicobacter acinonychis | Helicobacter | 0.8072 |
| Allofournierella massiliensis | Allofournierella | 0.7525 |
| Muribaculum intestinale | Muribaculum | 0.7494 |
| Helicobacter hepaticus | Helicobacter | 0.5977 |
| Ligilactobacillus aviarius | Ligilactobacillus | 0.5266 |
| Collinsella aerofaciens | Collinsella | 0.4723 |
| Bacillus cytotoxicus | Bacillus | 0.4722 |
| Clostridium phytofermentans | Clostridium | 0.4517 |
| Collinsella intestinalis | Collinsella | 0.4517 |
| Clostridium botulinum | Clostridium | 0.4417 |
| Desulfovibrio desulfuricans | Desulfovibrio | 0.3302 |
| Helicobacter macacae | Helicobacter | 0.2827 |
| Collinsella stercoris | Collinsella | 0.2669 |
| Lactobacillus crispatus | Lactobacillus | 0.2566 |
| Clostridium carnis | Clostridium | 0.2566 |
| Neglectibacter timonensis | Neglectibacter | 0.2566 |
| Enterococcus cecorum | Enterococcus | 0.2258 |
| Lactobacillus johnsonii | Lactobacillus | 0.1848 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.1745 |
Saved public metadata
{
"run_accession": "SRR27278322",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915773",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14049",
"base_count": "19147924",
"fastq_bytes": "15619903",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/022/SRR27278322/SRR27278322_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "cfad7d62b4c78510d0ffacd5bc3acc6435db908480b59f12d4444f77aa76877a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1456,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14049,
"reads_skipped": 4129,
"elapsed_seconds": 1.7918807669998387,
"reads_submitted": 14049,
"reads_after_filter": 14049,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"BC_FLANK": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}