SRR27278320 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Romboutsia timonensis | Romboutsia | 29.4117 |
| Romboutsia lituseburensis | Romboutsia | 12.0121 |
| Turicibacter sanguinis | Turicibacter | 9.2804 |
| Clostridium tertium | Clostridium | 8.4785 |
| Clostridium saudiense | Clostridium | 5.6517 |
| Romboutsia ilealis | Romboutsia | 5.1046 |
| Clostridium carnis | Clostridium | 4.4132 |
| Clostridium septicum | Clostridium | 3.8241 |
| Muribaculum intestinale | Muribaculum | 2.8868 |
| Clostridium isatidis | Clostridium | 2.8670 |
| Clostridium beijerinckii | Clostridium | 1.2030 |
| Clostridium fallax | Clostridium | 1.0800 |
| Subdoligranulum variabile | Subdoligranulum | 1.0091 |
| Clostridium disporicum | Clostridium | 0.9227 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 0.8788 |
| Collinsella tanakaei | Collinsella | 0.8685 |
| Bacteroides helcogenes | Bacteroides | 0.8568 |
| Bacteroides caecicola | Bacteroides | 0.8351 |
| Clostridium felsineum | Clostridium | 0.8061 |
| Romboutsia sedimentorum | Romboutsia | 0.7106 |
| Clostridium botulinum | Clostridium | 0.6958 |
| Collinsella aerofaciens | Collinsella | 0.6948 |
| Enorma phocaeensis | Enorma | 0.6664 |
| Gemmiger formicilis | Gemmiger | 0.6193 |
| Collinsella stercoris | Collinsella | 0.5978 |
| Floricoccus tropicus | Floricoccus | 0.5709 |
| Clostridium butyricum | Clostridium | 0.4368 |
| Massilistercora timonensis | Massilistercora | 0.4091 |
| Clostridium budayi | Clostridium | 0.3998 |
| Clostridium quinii | Clostridium | 0.3998 |
| Floricoccus penangensis | Floricoccus | 0.3766 |
| Bacteroides zoogleoformans | Bacteroides | 0.3492 |
| Bacteroides fluxus | Bacteroides | 0.3423 |
| Lactobacillus acidophilus | Lactobacillus | 0.3405 |
Saved public metadata
{
"run_accession": "SRR27278320",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915864",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "10506",
"base_count": "12475681",
"fastq_bytes": "10489307",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/020/SRR27278320/SRR27278320_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "27e80c7f77c9f4074f0c756910a3fd74d709c09defa13418ec7f65aa45ba4ada",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1444.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 10506,
"reads_skipped": 3658,
"elapsed_seconds": 1.1439065929998833,
"reads_submitted": 10506,
"reads_after_filter": 10506,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}