SRR27278317 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 14.0344 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.7190 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 10.5456 |
| Alistipes megaguti | Alistipes | 5.7259 |
| Blautia producta | Blautia | 5.3949 |
| Intestinimonas butyriciproducens | Intestinimonas | 5.2760 |
| Barnesiella viscericola | Barnesiella | 4.5975 |
| Massilistercora timonensis | Massilistercora | 3.8869 |
| Prevotella loescheii | Prevotella | 3.5558 |
| Pseudoflavonifractor phocaeensis | Pseudoflavonifractor | 3.1905 |
| Phocaeicola coprophilus | Phocaeicola | 2.8526 |
| Negativibacillus massiliensis | Negativibacillus | 2.7383 |
| Blautia glucerasea | Blautia | 2.3451 |
| Megasphaera stantonii | Megasphaera | 2.1708 |
| Allofournierella massiliensis | Allofournierella | 1.9877 |
| Ruminococcus champanellensis | Ruminococcus | 1.8766 |
| Parabacteroides merdae | Parabacteroides | 1.7518 |
| Desulfovibrio piger | Desulfovibrio | 1.6681 |
| Alistipes putredinis | Alistipes | 1.5520 |
| Alistipes dispar | Alistipes | 1.2869 |
| Phocaeicola vulgatus | Phocaeicola | 1.2265 |
| Blautia hansenii | Blautia | 1.1640 |
| Alistipes communis | Alistipes | 1.0008 |
| Alistipes finegoldii | Alistipes | 0.9271 |
| Phocaeicola salanitronis | Phocaeicola | 0.7975 |
| Romboutsia timonensis | Romboutsia | 0.6533 |
| Agathobaculum desmolans | Agathobaculum | 0.6270 |
| Phocaeicola coprocola | Phocaeicola | 0.5757 |
| Prevotella heparinolytica | Prevotella | 0.5387 |
| Prevotella dentasini | Prevotella | 0.5264 |
| Coprobacter fastidiosus | Coprobacter | 0.5144 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.4473 |
| Parabacteroides distasonis | Parabacteroides | 0.4444 |
| Helicobacter pullorum | Helicobacter | 0.4309 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.3475 |
| Alistipes indistinctus | Alistipes | 0.3253 |
| Prevotella denticola | Prevotella | 0.2965 |
Saved public metadata
{
"run_accession": "SRR27278317",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915867",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14780",
"base_count": "21530605",
"fastq_bytes": "18764726",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/017/SRR27278317/SRR27278317_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "a991035157a27af615700a31cd187368641f23717c51fb7de0e4b572b01f25af",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14780,
"reads_skipped": 7435,
"elapsed_seconds": 2.0206212459999993,
"reads_submitted": 14780,
"reads_after_filter": 14780,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}