SRR27278311 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 26.8372 |
| Faecalibacterium prausnitzii | Faecalibacterium | 10.2341 |
| Bacteroides caecicola | Bacteroides | 6.8924 |
| Phocaeicola salanitronis | Phocaeicola | 6.5398 |
| Bacteroides gallinaceus | Bacteroides | 5.4495 |
| Bacteroides helcogenes | Bacteroides | 5.4039 |
| Bacteroides fluxus | Bacteroides | 4.7142 |
| Blautia producta | Blautia | 2.5331 |
| Bacteroides uniformis | Bacteroides | 2.5051 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 2.4077 |
| Romboutsia timonensis | Romboutsia | 2.3442 |
| Bacteroides zoogleoformans | Bacteroides | 2.2841 |
| Megasphaera stantonii | Megasphaera | 2.2793 |
| Megamonas hypermegale | Megamonas | 2.0225 |
| Marseilla massiliensis | Marseilla | 1.9506 |
| Mucispirillum schaedleri | Mucispirillum | 1.8941 |
| Allofournierella massiliensis | Allofournierella | 1.7199 |
| Helicobacter pullorum | Helicobacter | 1.4928 |
| Phocaeicola coprophilus | Phocaeicola | 1.2337 |
| Bacteroides caecigallinarum | Bacteroides | 1.0390 |
| Neglectibacter timonensis | Neglectibacter | 0.9952 |
| Sellimonas intestinalis | Sellimonas | 0.9470 |
| Bacteroides cellulosilyticus | Bacteroides | 0.8917 |
| Romboutsia lituseburensis | Romboutsia | 0.8501 |
| Negativibacillus massiliensis | Negativibacillus | 0.6463 |
| Blautia hansenii | Blautia | 0.6453 |
| Blautia glucerasea | Blautia | 0.6257 |
| Bacteroides mediterraneensis | Bacteroides | 0.6050 |
| Enterococcus cecorum | Enterococcus | 0.5457 |
| Phocaeicola plebeius | Phocaeicola | 0.5309 |
| Bacteroides eggerthii | Bacteroides | 0.4744 |
| Agathobaculum desmolans | Agathobaculum | 0.4655 |
Saved public metadata
{
"run_accession": "SRR27278311",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915774",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15731",
"base_count": "22844651",
"fastq_bytes": "19730891",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/011/SRR27278311/SRR27278311_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "0616791d436a6ce492fb6c761a4523498eee4106380a06b10ce9bc918d175497",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15731,
"reads_skipped": 9387,
"elapsed_seconds": 1.1589207470001384,
"reads_submitted": 15731,
"reads_after_filter": 15731,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}