SRR27278309 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 17.3361 |
| Barnesiella viscericola | Barnesiella | 12.8892 |
| Bacteroides caecicola | Bacteroides | 7.3459 |
| Faecalibacterium prausnitzii | Faecalibacterium | 7.2137 |
| Bacteroides uniformis | Bacteroides | 4.8942 |
| Phocaeicola salanitronis | Phocaeicola | 4.8454 |
| Phocaeicola coprophilus | Phocaeicola | 4.6899 |
| Bacteroides helcogenes | Bacteroides | 4.6868 |
| Bacteroides fluxus | Bacteroides | 3.8986 |
| Bacteroides caecigallinarum | Bacteroides | 3.2951 |
| Desulfovibrio piger | Desulfovibrio | 3.2542 |
| Bacteroides zoogleoformans | Bacteroides | 3.2074 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 3.1968 |
| Massilistercora timonensis | Massilistercora | 3.0557 |
| Mordavella massiliensis | Mordavella | 1.8256 |
| Romboutsia timonensis | Romboutsia | 1.5314 |
| Allofournierella massiliensis | Allofournierella | 1.3238 |
| Bacteroides mediterraneensis | Bacteroides | 1.3048 |
| Bacteroides gallinaceus | Bacteroides | 1.2150 |
| Bacteroides eggerthii | Bacteroides | 1.1299 |
| Lactobacillus crispatus | Lactobacillus | 1.1294 |
| Phocaeicola coprocola | Phocaeicola | 1.1024 |
| Alistipes megaguti | Alistipes | 1.0298 |
| Bacteroides cellulosilyticus | Bacteroides | 0.8544 |
| Phocaeicola dorei | Phocaeicola | 0.6823 |
| Bacteroides fragilis | Bacteroides | 0.6640 |
| Alistipes dispar | Alistipes | 0.6028 |
| Agathobaculum desmolans | Agathobaculum | 0.5743 |
| Alistipes putredinis | Alistipes | 0.5128 |
| Lactobacillus johnsonii | Lactobacillus | 0.4403 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.2680 |
Saved public metadata
{
"run_accession": "SRR27278309",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915776",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17443",
"base_count": "25329049",
"fastq_bytes": "22284945",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/009/SRR27278309/SRR27278309_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3bd8b512cfe733329cc89b0d81ff40a9d22c36b2d383b7d912ad09a6d8179b9c",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17443,
"reads_skipped": 12113,
"elapsed_seconds": 1.240438522999284,
"reads_submitted": 17443,
"reads_after_filter": 17443,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}