SRR27278296 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 47.4186 |
| Romboutsia timonensis | Romboutsia | 8.7036 |
| Massilistercora timonensis | Massilistercora | 6.1977 |
| Phocaeicola salanitronis | Phocaeicola | 4.5874 |
| Blautia producta | Blautia | 3.5622 |
| Mordavella massiliensis | Mordavella | 2.9155 |
| Desulfovibrio piger | Desulfovibrio | 2.2854 |
| Neglectibacter timonensis | Neglectibacter | 2.1162 |
| Allofournierella massiliensis | Allofournierella | 1.8453 |
| Clostridium saudiense | Clostridium | 1.7268 |
| Enterococcus cecorum | Enterococcus | 1.6760 |
| Blautia hansenii | Blautia | 1.5212 |
| Alistipes megaguti | Alistipes | 1.4171 |
| Romboutsia lituseburensis | Romboutsia | 1.3874 |
| Blautia glucerasea | Blautia | 1.3418 |
| Sphaerochaeta coccoides | Sphaerochaeta | 1.3311 |
| Pseudoflavonifractor phocaeensis | Pseudoflavonifractor | 1.2866 |
| Sphaerochaeta globosa | Sphaerochaeta | 1.1315 |
| Phocaeicola plebeius | Phocaeicola | 1.1173 |
| Romboutsia ilealis | Romboutsia | 1.0653 |
| Negativibacillus massiliensis | Negativibacillus | 1.0157 |
| Phocaeicola coprophilus | Phocaeicola | 0.5586 |
| Lactobacillus crispatus | Lactobacillus | 0.5417 |
| Alistipes putredinis | Alistipes | 0.5354 |
| Peptococcus niger | Peptococcus | 0.5248 |
| Clostridium phytofermentans | Clostridium | 0.4764 |
| Alistipes dispar | Alistipes | 0.4685 |
| Sphaerochaeta pleomorpha | Sphaerochaeta | 0.4323 |
| Agathobaculum desmolans | Agathobaculum | 0.3893 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.2201 |
| Lactobacillus johnsonii | Lactobacillus | 0.2031 |
Saved public metadata
{
"run_accession": "SRR27278296",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915817",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17338",
"base_count": "25252818",
"fastq_bytes": "21893700",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/096/SRR27278296/SRR27278296_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "4c5b26416c63c823d26f6b6defcdf2950409388c96b59ec241a57980d892465d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17338,
"reads_skipped": 11298,
"elapsed_seconds": 1.2723933530000977,
"reads_submitted": 17338,
"reads_after_filter": 17338,
"adapter_scan": {
"sampled": 200,
"matched": 2,
"fraction": 0.01,
"adapters_found": {
"BC_FLANK": 2
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}