SRR27278289 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Phascolarctobacterium faecium | Phascolarctobacterium | 17.8934 |
| Muribaculum intestinale | Muribaculum | 9.7230 |
| Mucispirillum schaedleri | Mucispirillum | 6.8169 |
| Barnesiella viscericola | Barnesiella | 6.3596 |
| Phocaeicola coprophilus | Phocaeicola | 5.8117 |
| Blautia producta | Blautia | 4.1644 |
| Phocaeicola salanitronis | Phocaeicola | 3.8805 |
| Bacteroides caecicola | Bacteroides | 3.5136 |
| Bacteroides caecigallinarum | Bacteroides | 3.4275 |
| Bacteroides helcogenes | Bacteroides | 3.1406 |
| Massilistercora timonensis | Massilistercora | 2.8440 |
| Bacteroides fluxus | Bacteroides | 2.8069 |
| Bacteroides zoogleoformans | Bacteroides | 2.2805 |
| Mordavella massiliensis | Mordavella | 2.0056 |
| Bacteroides uniformis | Bacteroides | 1.9469 |
| Phocaeicola coprocola | Phocaeicola | 1.7502 |
| Bacteroides gallinaceus | Bacteroides | 1.6170 |
| Blautia glucerasea | Blautia | 1.6114 |
| Negativibacillus massiliensis | Negativibacillus | 1.5164 |
| Desulfovibrio piger | Desulfovibrio | 1.4176 |
| Megasphaera stantonii | Megasphaera | 1.3661 |
| Phocaeicola plebeius | Phocaeicola | 1.3602 |
| Marseilla massiliensis | Marseilla | 1.3525 |
| Romboutsia timonensis | Romboutsia | 1.2295 |
| Bacteroides mediterraneensis | Bacteroides | 1.0599 |
| Phocaeicola dorei | Phocaeicola | 1.0175 |
| Allofournierella massiliensis | Allofournierella | 0.9290 |
| Bacteroides cellulosilyticus | Bacteroides | 0.8862 |
| Bacteroides eggerthii | Bacteroides | 0.8485 |
| Blautia hansenii | Blautia | 0.7680 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.7506 |
| Agathobaculum desmolans | Agathobaculum | 0.6421 |
| Acidaminococcus fermentans | Acidaminococcus | 0.6046 |
| Phocaeicola barnesiae | Phocaeicola | 0.5464 |
| Desulfovibrio desulfuricans | Desulfovibrio | 0.4813 |
| Alistipes putredinis | Alistipes | 0.4450 |
| Bacteroides fragilis | Bacteroides | 0.4384 |
| Phocaeicola vulgatus | Phocaeicola | 0.3990 |
| Alistipes megaguti | Alistipes | 0.3474 |
Saved public metadata
{
"run_accession": "SRR27278289",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915772",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "16075",
"base_count": "23362933",
"fastq_bytes": "20384555",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/089/SRR27278289/SRR27278289_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e913e250e06e53a746b774be87c7959dc653dd71f67391c05ea0eaddb4c262b3",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 16075,
"reads_skipped": 8677,
"elapsed_seconds": 1.2099331589997746,
"reads_submitted": 16075,
"reads_after_filter": 16075,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}