SRR27278278 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 21.8489 |
| Faecalibacterium prausnitzii | Faecalibacterium | 15.2187 |
| Bacteroides caecicola | Bacteroides | 12.7720 |
| Massilistercora timonensis | Massilistercora | 6.3831 |
| Blautia producta | Blautia | 4.7936 |
| Mordavella massiliensis | Mordavella | 3.8558 |
| Bacteroides helcogenes | Bacteroides | 3.8501 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 3.7802 |
| Phocaeicola salanitronis | Phocaeicola | 3.2478 |
| Bacteroides gallinaceus | Bacteroides | 2.4063 |
| Blautia glucerasea | Blautia | 2.2404 |
| Bacteroides fluxus | Bacteroides | 2.0353 |
| Romboutsia timonensis | Romboutsia | 1.6739 |
| Bacteroides zoogleoformans | Bacteroides | 1.5860 |
| Desulfovibrio piger | Desulfovibrio | 1.3949 |
| Blautia hansenii | Blautia | 1.3478 |
| Ruminococcus champanellensis | Ruminococcus | 1.1167 |
| Marseilla massiliensis | Marseilla | 1.0740 |
| Phocaeicola coprophilus | Phocaeicola | 0.9646 |
| Bacteroides uniformis | Bacteroides | 0.9292 |
| Bacteroides mediterraneensis | Bacteroides | 0.8831 |
| Bacteroides eggerthii | Bacteroides | 0.7827 |
| Collinsella tanakaei | Collinsella | 0.7060 |
| Bacteroides cellulosilyticus | Bacteroides | 0.6958 |
| Alistipes dispar | Alistipes | 0.6417 |
| Peptococcus niger | Peptococcus | 0.6277 |
| Agathobaculum desmolans | Agathobaculum | 0.6138 |
| Enterococcus cecorum | Enterococcus | 0.6138 |
| Collinsella aerofaciens | Collinsella | 0.6052 |
| Alistipes megaguti | Alistipes | 0.5440 |
| Alistipes communis | Alistipes | 0.4045 |
| Negativibacillus massiliensis | Negativibacillus | 0.3627 |
Saved public metadata
{
"run_accession": "SRR27278278",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915779",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "15067",
"base_count": "21810850",
"fastq_bytes": "18809739",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/078/SRR27278278/SRR27278278_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "9a020760978ae2def75e4001f43ec31bafe9d506f76fe8eed9ec170fc0d4f8d4",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 15067,
"reads_skipped": 7764,
"elapsed_seconds": 1.1577685219999694,
"reads_submitted": 15067,
"reads_after_filter": 15067,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}