SRR27278276 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 28.6804 |
| Faecalibacterium prausnitzii | Faecalibacterium | 12.0043 |
| Parabacteroides distasonis | Parabacteroides | 9.6195 |
| Blautia producta | Blautia | 5.6862 |
| Phocaeicola coprophilus | Phocaeicola | 5.2782 |
| Massilistercora timonensis | Massilistercora | 4.9151 |
| Romboutsia timonensis | Romboutsia | 4.0280 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 3.3163 |
| Blautia glucerasea | Blautia | 2.7967 |
| Enterococcus cecorum | Enterococcus | 2.1759 |
| Phocaeicola coprocola | Phocaeicola | 1.7996 |
| Desulfovibrio piger | Desulfovibrio | 1.5336 |
| Alistipes megaguti | Alistipes | 1.3712 |
| Blautia hansenii | Blautia | 1.3330 |
| Dysosmobacter welbionis | Dysosmobacter | 1.2453 |
| Mordavella massiliensis | Mordavella | 1.2345 |
| Negativibacillus massiliensis | Negativibacillus | 1.1011 |
| Romboutsia lituseburensis | Romboutsia | 1.0492 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.0355 |
| Neglectibacter timonensis | Neglectibacter | 1.0210 |
| Phocaeicola vulgatus | Phocaeicola | 0.9548 |
| Peptococcus niger | Peptococcus | 0.9176 |
| Alistipes dispar | Alistipes | 0.8672 |
| Phocaeicola salanitronis | Phocaeicola | 0.6973 |
| Lactobacillus crispatus | Lactobacillus | 0.6685 |
| Phocaeicola barnesiae | Phocaeicola | 0.6030 |
| Romboutsia ilealis | Romboutsia | 0.4543 |
| Parabacteroides gordonii | Parabacteroides | 0.4460 |
| Ethanoligenens harbinense | Ethanoligenens | 0.4446 |
| Alistipes putredinis | Alistipes | 0.4225 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.3928 |
| Gemmiger formicilis | Gemmiger | 0.3871 |
| Alistipes communis | Alistipes | 0.3801 |
| Enterococcus faecium | Enterococcus | 0.3670 |
| Parabacteroides faecis | Parabacteroides | 0.2772 |
| Subdoligranulum variabile | Subdoligranulum | 0.2728 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.2228 |
Saved public metadata
{
"run_accession": "SRR27278276",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915781",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "16221",
"base_count": "23743696",
"fastq_bytes": "20342897",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/076/SRR27278276/SRR27278276_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "d9d0eb4eda8de61138ba4d1b9bf97cddb5e182db2eb48b1f593a350fbc0187ce",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 16221,
"reads_skipped": 8512,
"elapsed_seconds": 1.2186117880000893,
"reads_submitted": 16221,
"reads_after_filter": 16221,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}