SRR27278269 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Bacteroides caecicola | Bacteroides | 21.2037 |
| Muribaculum intestinale | Muribaculum | 13.3695 |
| Barnesiella viscericola | Barnesiella | 11.0336 |
| Massilistercora timonensis | Massilistercora | 7.2631 |
| Faecalibacterium prausnitzii | Faecalibacterium | 6.0351 |
| Bacteroides gallinaceus | Bacteroides | 3.9092 |
| Bacteroides helcogenes | Bacteroides | 3.5371 |
| Bacteroides zoogleoformans | Bacteroides | 2.6617 |
| Phocaeicola coprophilus | Phocaeicola | 2.5943 |
| Phocaeicola salanitronis | Phocaeicola | 2.5537 |
| Blautia producta | Blautia | 2.5473 |
| Mordavella massiliensis | Mordavella | 2.1256 |
| Bacteroides eggerthii | Bacteroides | 2.0154 |
| Bacteroides uniformis | Bacteroides | 1.6763 |
| Bacteroides fluxus | Bacteroides | 1.6071 |
| Desulfovibrio piger | Desulfovibrio | 1.6043 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.4384 |
| Blautia glucerasea | Blautia | 1.2539 |
| Marseilla massiliensis | Marseilla | 1.2093 |
| Alistipes dispar | Alistipes | 0.9257 |
| Bacteroides mediterraneensis | Bacteroides | 0.8690 |
| Collinsella aerofaciens | Collinsella | 0.8155 |
| Bacteroides cellulosilyticus | Bacteroides | 0.6929 |
| Alistipes megaguti | Alistipes | 0.6859 |
| Dysosmobacter welbionis | Dysosmobacter | 0.6528 |
| Alistipes communis | Alistipes | 0.6528 |
| Collinsella tanakaei | Collinsella | 0.6229 |
| Romboutsia timonensis | Romboutsia | 0.5753 |
| Phocaeicola coprocola | Phocaeicola | 0.5650 |
| Negativibacillus massiliensis | Negativibacillus | 0.5532 |
| Blautia hansenii | Blautia | 0.4806 |
| Alistipes putredinis | Alistipes | 0.4788 |
| Bacteroides fragilis | Bacteroides | 0.4593 |
| Bacteroides caecigallinarum | Bacteroides | 0.3999 |
| Phocaeicola dorei | Phocaeicola | 0.3488 |
| Phocaeicola vulgatus | Phocaeicola | 0.2951 |
| Enterococcus cecorum | Enterococcus | 0.2877 |
Saved public metadata
{
"run_accession": "SRR27278269",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915787",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17227",
"base_count": "25054574",
"fastq_bytes": "21577063",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/069/SRR27278269/SRR27278269_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "238b4d61de6d02594fe28bf47b4c7c06247b295b3f78ef33679c0230079d4638",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17227,
"reads_skipped": 8083,
"elapsed_seconds": 1.5966370859999994,
"reads_submitted": 17227,
"reads_after_filter": 17227,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}