SRR27278267 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 28.7489 |
| Faecalibacterium prausnitzii | Faecalibacterium | 11.9432 |
| Bacteroides caecicola | Bacteroides | 11.4151 |
| Massilistercora timonensis | Massilistercora | 6.2714 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 5.2108 |
| Blautia producta | Blautia | 4.4950 |
| Bacteroides helcogenes | Bacteroides | 4.3918 |
| Blautia glucerasea | Blautia | 3.4036 |
| Romboutsia timonensis | Romboutsia | 2.5758 |
| Mordavella massiliensis | Mordavella | 2.5506 |
| Bacteroides fluxus | Bacteroides | 2.3786 |
| Phocaeicola salanitronis | Phocaeicola | 1.8340 |
| Bacteroides gallinaceus | Bacteroides | 1.7966 |
| Peptococcus niger | Peptococcus | 1.4930 |
| Bacteroides zoogleoformans | Bacteroides | 1.2882 |
| Marseilla massiliensis | Marseilla | 1.1563 |
| Blautia hansenii | Blautia | 0.9755 |
| Collinsella aerofaciens | Collinsella | 0.7610 |
| Collinsella tanakaei | Collinsella | 0.7466 |
| Enterococcus cecorum | Enterococcus | 0.7319 |
| Alistipes dispar | Alistipes | 0.7172 |
| Dysosmobacter welbionis | Dysosmobacter | 0.7026 |
| Romboutsia lituseburensis | Romboutsia | 0.6297 |
| Bacteroides uniformis | Bacteroides | 0.6151 |
| Bacteroides eggerthii | Bacteroides | 0.5629 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4551 |
| Negativibacillus massiliensis | Negativibacillus | 0.4397 |
| Collinsella stercoris | Collinsella | 0.4391 |
| Bacteroides mediterraneensis | Bacteroides | 0.4071 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.3806 |
| Agathobaculum desmolans | Agathobaculum | 0.2927 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.1903 |
Saved public metadata
{
"run_accession": "SRR27278267",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915789",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14443",
"base_count": "20976123",
"fastq_bytes": "17985809",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/067/SRR27278267/SRR27278267_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "cc254a63c5a0aff5ab03018ef6813a74a4c4ee40bac1c2ba99f42dce294d1dec",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14443,
"reads_skipped": 7484,
"elapsed_seconds": 1.1126552509999783,
"reads_submitted": 14443,
"reads_after_filter": 14443,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}