SRR27278262 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 15.3443 |
| Barnesiella viscericola | Barnesiella | 13.8182 |
| Bacteroides caecicola | Bacteroides | 12.1038 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 11.2456 |
| Massilistercora timonensis | Massilistercora | 8.4217 |
| Faecalibacterium prausnitzii | Faecalibacterium | 4.6472 |
| Mordavella massiliensis | Mordavella | 4.0959 |
| Megasphaera stantonii | Megasphaera | 3.8342 |
| Blautia producta | Blautia | 3.0457 |
| Bacteroides helcogenes | Bacteroides | 2.4309 |
| Dysosmobacter welbionis | Dysosmobacter | 1.9103 |
| Lactobacillus crispatus | Lactobacillus | 1.8574 |
| Bacteroides fluxus | Bacteroides | 1.8295 |
| Bacteroides gallinaceus | Bacteroides | 1.1465 |
| Blautia hansenii | Blautia | 1.1255 |
| Negativibacillus massiliensis | Negativibacillus | 1.1245 |
| Bacteroides zoogleoformans | Bacteroides | 1.0973 |
| Desulfovibrio piger | Desulfovibrio | 1.0839 |
| Alistipes megaguti | Alistipes | 0.9885 |
| Ruminococcus champanellensis | Ruminococcus | 0.8677 |
| Blautia glucerasea | Blautia | 0.8563 |
| Lactobacillus helveticus | Lactobacillus | 0.8252 |
| Romboutsia timonensis | Romboutsia | 0.7587 |
| Bacteroides uniformis | Bacteroides | 0.7000 |
| Bacteroides caecigallinarum | Bacteroides | 0.5988 |
| Sphaerochaeta coccoides | Sphaerochaeta | 0.5419 |
| Bacteroides mediterraneensis | Bacteroides | 0.5212 |
| Bacteroides cellulosilyticus | Bacteroides | 0.5053 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.4877 |
| Bacteroides fragilis | Bacteroides | 0.4661 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 0.4200 |
| Alistipes communis | Alistipes | 0.3658 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.3653 |
| Lactobacillus johnsonii | Lactobacillus | 0.3387 |
| Agathobaculum desmolans | Agathobaculum | 0.2303 |
Saved public metadata
{
"run_accession": "SRR27278262",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915769",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14526",
"base_count": "21115726",
"fastq_bytes": "18308017",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/062/SRR27278262/SRR27278262_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e58ed2f754da7df146dd7151177d62c21861c0afc97fb9560be66f3e2f944b4f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14526,
"reads_skipped": 7047,
"elapsed_seconds": 1.1394536790003258,
"reads_submitted": 14526,
"reads_after_filter": 14526,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}