SRR27278259 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 34.2300 |
| Bacteroides caecicola | Bacteroides | 20.7366 |
| Faecalibacterium prausnitzii | Faecalibacterium | 9.7292 |
| Bacteroides helcogenes | Bacteroides | 5.6261 |
| Massilistercora timonensis | Massilistercora | 3.4563 |
| Bacteroides fluxus | Bacteroides | 2.6130 |
| Bacteroides gallinaceus | Bacteroides | 2.5439 |
| Romboutsia timonensis | Romboutsia | 2.5138 |
| Blautia producta | Blautia | 2.3934 |
| Desulfovibrio piger | Desulfovibrio | 1.9186 |
| Bacteroides zoogleoformans | Bacteroides | 1.5377 |
| Alistipes dispar | Alistipes | 1.3335 |
| Dysosmobacter welbionis | Dysosmobacter | 1.1022 |
| Bacteroides uniformis | Bacteroides | 0.9664 |
| Mordavella massiliensis | Mordavella | 0.9252 |
| Neglectibacter timonensis | Neglectibacter | 0.9117 |
| Alistipes megaguti | Alistipes | 0.8164 |
| Peptococcus niger | Peptococcus | 0.8164 |
| Romboutsia lituseburensis | Romboutsia | 0.7520 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.7484 |
| Blautia hansenii | Blautia | 0.7336 |
| Bacteroides cellulosilyticus | Bacteroides | 0.6623 |
| Blautia glucerasea | Blautia | 0.6150 |
| Bacteroides mediterraneensis | Bacteroides | 0.5591 |
| Limosilactobacillus vaginalis | Limosilactobacillus | 0.5307 |
| Alistipes communis | Alistipes | 0.4899 |
| Bacteroides eggerthii | Bacteroides | 0.4256 |
| Agathobaculum desmolans | Agathobaculum | 0.3130 |
Saved public metadata
{
"run_accession": "SRR27278259",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915825",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "13903",
"base_count": "20197202",
"fastq_bytes": "17008117",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/059/SRR27278259/SRR27278259_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "71d825799508327f5d305927cac4ba916c21f590b151690d4c337cd648fc8495",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 13903,
"reads_skipped": 6416,
"elapsed_seconds": 1.075482089000161,
"reads_submitted": 13903,
"reads_after_filter": 13903,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}