SRR27278253 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 37.3492 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 13.1547 |
| Faecalibacterium prausnitzii | Faecalibacterium | 7.7573 |
| Bacteroides helcogenes | Bacteroides | 6.9634 |
| Bacteroides gallinaceus | Bacteroides | 4.4416 |
| Bacteroides fluxus | Bacteroides | 3.2481 |
| Phocaeicola coprophilus | Phocaeicola | 3.2372 |
| Blautia producta | Blautia | 2.9167 |
| Romboutsia timonensis | Romboutsia | 2.1668 |
| Phocaeicola salanitronis | Phocaeicola | 1.9464 |
| Bacteroides uniformis | Bacteroides | 1.5054 |
| Bacteroides zoogleoformans | Bacteroides | 1.4704 |
| Bacteroides eggerthii | Bacteroides | 1.0826 |
| Blautia glucerasea | Blautia | 1.0783 |
| Alistipes megaguti | Alistipes | 1.0643 |
| Bacteroides cellulosilyticus | Bacteroides | 0.9622 |
| Enterococcus cecorum | Enterococcus | 0.8868 |
| Bacteroides caecicola | Bacteroides | 0.8298 |
| Collinsella tanakaei | Collinsella | 0.7189 |
| Alistipes dispar | Alistipes | 0.6982 |
| Collinsella aerofaciens | Collinsella | 0.6699 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.5921 |
| Phocaeicola coprocola | Phocaeicola | 0.5038 |
| Bacteroides mediterraneensis | Bacteroides | 0.4902 |
| Bacteroides fragilis | Bacteroides | 0.4860 |
| Romboutsia lituseburensis | Romboutsia | 0.4826 |
| Blautia hansenii | Blautia | 0.4728 |
| Massilistercora timonensis | Massilistercora | 0.4154 |
| Phocaeicola plebeius | Phocaeicola | 0.3539 |
| Bacteroides clarus | Bacteroides | 0.3169 |
| Phocaeicola barnesiae | Phocaeicola | 0.3031 |
| Acidaminococcus fermentans | Acidaminococcus | 0.2856 |
| Collinsella stercoris | Collinsella | 0.2839 |
| Phocaeicola vulgatus | Phocaeicola | 0.2821 |
| Subdoligranulum variabile | Subdoligranulum | 0.2466 |
| Pseudoflavonifractor phocaeensis | Pseudoflavonifractor | 0.2024 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.1347 |
Saved public metadata
{
"run_accession": "SRR27278253",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915831",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "17292",
"base_count": "25125805",
"fastq_bytes": "20881735",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/053/SRR27278253/SRR27278253_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "06ea27b0d264a91fc63f09f2323007b636808e383cbb27bb2e55256d39321f2a",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 17292,
"reads_skipped": 8312,
"elapsed_seconds": 1.2929892279998967,
"reads_submitted": 17292,
"reads_after_filter": 17292,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}