SRR27278248 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Phocaeicola coprophilus | Phocaeicola | 18.6156 |
| Barnesiella viscericola | Barnesiella | 10.5096 |
| Phocaeicola coprocola | Phocaeicola | 7.3103 |
| Faecalibacterium prausnitzii | Faecalibacterium | 6.4167 |
| Desulfovibrio piger | Desulfovibrio | 5.4078 |
| Alistipes megaguti | Alistipes | 5.3933 |
| Bacteroides caecigallinarum | Bacteroides | 5.1810 |
| Blautia producta | Blautia | 3.6247 |
| Bacteroides mediterraneensis | Bacteroides | 3.1921 |
| Bacteroides zoogleoformans | Bacteroides | 3.1294 |
| Bacteroides uniformis | Bacteroides | 2.7787 |
| Phocaeicola barnesiae | Phocaeicola | 2.5059 |
| Bacteroides eggerthii | Bacteroides | 2.2022 |
| Blautia glucerasea | Blautia | 2.0494 |
| Phocaeicola vulgatus | Phocaeicola | 1.7238 |
| Phocaeicola plebeius | Phocaeicola | 1.5309 |
| Bacteroides cellulosilyticus | Bacteroides | 1.4814 |
| Neglectibacter timonensis | Neglectibacter | 1.4717 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 1.4701 |
| Massilistercora timonensis | Massilistercora | 1.3424 |
| Alistipes dispar | Alistipes | 1.3181 |
| Romboutsia timonensis | Romboutsia | 1.2912 |
| Alistipes putredinis | Alistipes | 1.0989 |
| Phocaeicola salanitronis | Phocaeicola | 1.0159 |
| Ruminococcus champanellensis | Ruminococcus | 0.9528 |
| Parabacteroides distasonis | Parabacteroides | 0.9205 |
| Alistipes communis | Alistipes | 0.8693 |
| Phocaeicola dorei | Phocaeicola | 0.7134 |
| Blautia hansenii | Blautia | 0.6575 |
| Bacteroides fragilis | Bacteroides | 0.6152 |
| Peptococcus niger | Peptococcus | 0.6009 |
| Bacteroides helcogenes | Bacteroides | 0.5490 |
| Sellimonas intestinalis | Sellimonas | 0.4883 |
| Bacteroides ovatus | Bacteroides | 0.4684 |
| Alistipes finegoldii | Alistipes | 0.4101 |
| Romboutsia lituseburensis | Romboutsia | 0.3835 |
| Negativibacillus massiliensis | Negativibacillus | 0.3100 |
Saved public metadata
{
"run_accession": "SRR27278248",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915835",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14477",
"base_count": "20975234",
"fastq_bytes": "18161588",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/048/SRR27278248/SRR27278248_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "4d8b1db1f76312919b7833a4aa9cffc58b81ee6b7f60cbc9dd2a5364255d647f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14477,
"reads_skipped": 6522,
"elapsed_seconds": 1.2983526650004933,
"reads_submitted": 14477,
"reads_after_filter": 14477,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}