SRR27278246 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 17.3306 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 14.1317 |
| Parabacteroides distasonis | Parabacteroides | 9.7557 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 9.4273 |
| Barnesiella viscericola | Barnesiella | 9.2339 |
| Faecalibacterium prausnitzii | Faecalibacterium | 5.5872 |
| Blautia producta | Blautia | 5.2382 |
| Mordavella massiliensis | Mordavella | 3.2847 |
| Phocaeicola coprophilus | Phocaeicola | 3.1704 |
| Phocaeicola salanitronis | Phocaeicola | 2.8816 |
| Allofournierella massiliensis | Allofournierella | 2.8712 |
| Desulfovibrio piger | Desulfovibrio | 1.8997 |
| Alistipes dispar | Alistipes | 1.8186 |
| Phocaeicola plebeius | Phocaeicola | 1.2428 |
| Blautia hansenii | Blautia | 1.2365 |
| Phocaeicola coprocola | Phocaeicola | 1.2240 |
| Blautia glucerasea | Blautia | 1.1616 |
| Alistipes megaguti | Alistipes | 1.0613 |
| Negativibacillus massiliensis | Negativibacillus | 0.8449 |
| Ruminococcus champanellensis | Ruminococcus | 0.7244 |
| Phocaeicola vulgatus | Phocaeicola | 0.7027 |
| Parabacteroides faecis | Parabacteroides | 0.6676 |
| Dysosmobacter welbionis | Dysosmobacter | 0.6654 |
| Alistipes putredinis | Alistipes | 0.6596 |
| Peptococcus niger | Peptococcus | 0.6332 |
| Agathobaculum desmolans | Agathobaculum | 0.6007 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.5418 |
| Phocaeicola barnesiae | Phocaeicola | 0.5196 |
| Ruminococcus callidus | Ruminococcus | 0.4772 |
| Romboutsia timonensis | Romboutsia | 0.4059 |
Saved public metadata
{
"run_accession": "SRR27278246",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915793",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "12547",
"base_count": "18215962",
"fastq_bytes": "15648696",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/046/SRR27278246/SRR27278246_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "16c5e41660f7bdba257180e592396d551337ad9b16f476742aec53cde9ab00a1",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1484,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12547,
"reads_skipped": 6298,
"elapsed_seconds": 1.2797707149999997,
"reads_submitted": 12547,
"reads_after_filter": 12547,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}