SRR27278241 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Romboutsia timonensis | Romboutsia | 38.8513 |
| Romboutsia lituseburensis | Romboutsia | 12.5804 |
| Romboutsia ilealis | Romboutsia | 5.9591 |
| Staphylococcus aureus | Staphylococcus | 3.8871 |
| Blautia producta | Blautia | 3.8022 |
| Lactobacillus johnsonii | Lactobacillus | 3.6526 |
| Enterococcus faecium | Enterococcus | 3.6305 |
| Staphylococcus kloosii | Staphylococcus | 2.1736 |
| Staphylococcus saprophyticus | Staphylococcus | 1.9951 |
| Collinsella intestinalis | Collinsella | 1.9340 |
| Lactobacillus crispatus | Lactobacillus | 1.8402 |
| Enterococcus cecorum | Enterococcus | 1.6730 |
| Blautia glucerasea | Blautia | 1.5175 |
| Collinsella aerofaciens | Collinsella | 1.4643 |
| Sellimonas intestinalis | Sellimonas | 1.4638 |
| Blautia hansenii | Blautia | 1.2885 |
| Staphylococcus cohnii | Staphylococcus | 1.2618 |
| Staphylococcus arlettae | Staphylococcus | 1.2360 |
| Romboutsia sedimentorum | Romboutsia | 1.2039 |
| Turicibacter sanguinis | Turicibacter | 1.1571 |
| Collinsella stercoris | Collinsella | 1.1405 |
| Collinsella tanakaei | Collinsella | 1.0516 |
| Ligilactobacillus salivarius | Ligilactobacillus | 1.0177 |
| Bacillus cytotoxicus | Bacillus | 0.9480 |
| Bifidobacterium pseudolongum | Bifidobacterium | 0.5437 |
| Limosilactobacillus reuteri | Limosilactobacillus | 0.5298 |
| Enterococcus durans | Enterococcus | 0.5100 |
| Staphylococcus pseudintermedius | Staphylococcus | 0.4322 |
| Weissella thailandensis | Weissella | 0.3904 |
| Lactobacillus acetotolerans | Lactobacillus | 0.3610 |
| Lactobacillus delbrueckii | Lactobacillus | 0.3222 |
| Escherichia coli | Escherichia | 0.1812 |
Saved public metadata
{
"run_accession": "SRR27278241",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915798",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "11640",
"base_count": "15062850",
"fastq_bytes": "12487105",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/041/SRR27278241/SRR27278241_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "8d1e84f8d5f1c04391bec187b84061f8051ae83e71f7aacd8d337f66a7e7870f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1454.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 11640,
"reads_skipped": 4299,
"elapsed_seconds": 1.1957871750000777,
"reads_submitted": 11640,
"reads_after_filter": 11640,
"adapter_scan": {
"sampled": 200,
"matched": 3,
"fraction": 0.015,
"adapters_found": {
"BC_FLANK": 2,
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}