SRR27278240 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Muribaculum intestinale | Muribaculum | 21.8395 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 10.9742 |
| Faecalibacterium prausnitzii | Faecalibacterium | 10.0134 |
| Parabacteroides distasonis | Parabacteroides | 8.5158 |
| Massilistercora timonensis | Massilistercora | 6.4005 |
| Bacteroides helcogenes | Bacteroides | 4.1849 |
| Blautia producta | Blautia | 3.3058 |
| Phocaeicola coprophilus | Phocaeicola | 3.0116 |
| Allofournierella massiliensis | Allofournierella | 2.7972 |
| Bacteroides gallinaceus | Bacteroides | 2.6732 |
| Bacteroides eggerthii | Bacteroides | 2.5081 |
| Bacteroides fluxus | Bacteroides | 2.3361 |
| Desulfovibrio piger | Desulfovibrio | 1.9351 |
| Blautia glucerasea | Blautia | 1.5169 |
| Peptococcus niger | Peptococcus | 1.4854 |
| Mordavella massiliensis | Mordavella | 1.4218 |
| Megasphaera stantonii | Megasphaera | 1.2674 |
| Romboutsia timonensis | Romboutsia | 1.2674 |
| Bacteroides zoogleoformans | Bacteroides | 1.2109 |
| Bacteroides uniformis | Bacteroides | 1.1810 |
| Phocaeicola salanitronis | Phocaeicola | 1.0942 |
| Alistipes dispar | Alistipes | 1.0433 |
| Blautia hansenii | Blautia | 1.0372 |
| Alistipes megaguti | Alistipes | 0.8366 |
| Phocaeicola coprocola | Phocaeicola | 0.8156 |
| Negativibacillus massiliensis | Negativibacillus | 0.7622 |
| Bacteroides cellulosilyticus | Bacteroides | 0.6506 |
| Collinsella tanakaei | Collinsella | 0.6087 |
| Bacteroides mediterraneensis | Bacteroides | 0.5924 |
| Christensenella minuta | Christensenella | 0.5860 |
| Agathobaculum desmolans | Agathobaculum | 0.5042 |
| Lactobacillus crispatus | Lactobacillus | 0.4361 |
| Phascolarctobacterium succinatutens | Phascolarctobacterium | 0.3913 |
| Collinsella aerofaciens | Collinsella | 0.3043 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.2866 |
| Pseudoflavonifractor phocaeensis | Pseudoflavonifractor | 0.2044 |
Saved public metadata
{
"run_accession": "SRR27278240",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915799",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "14482",
"base_count": "21126618",
"fastq_bytes": "18150504",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/040/SRR27278240/SRR27278240_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "cd4c0215145abc89270cce5f0542ea700d6968a12b0c5d0bf58da825c56768a0",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 14482,
"reads_skipped": 6993,
"elapsed_seconds": 1.1009600249999494,
"reads_submitted": 14482,
"reads_after_filter": 14482,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}