SRR27278238 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Barnesiella viscericola | Barnesiella | 23.2389 |
| Muribaculum intestinale | Muribaculum | 19.1535 |
| Bacteroides gallinaceus | Bacteroides | 14.2517 |
| Bacteroides helcogenes | Bacteroides | 4.1738 |
| Phocaeicola salanitronis | Phocaeicola | 4.1276 |
| Blautia producta | Blautia | 3.6968 |
| Faecalibacterium prausnitzii | Faecalibacterium | 3.1092 |
| Desulfovibrio piger | Desulfovibrio | 3.0578 |
| Ruminococcus champanellensis | Ruminococcus | 1.9971 |
| Bacteroides zoogleoformans | Bacteroides | 1.9018 |
| Phocaeicola coprophilus | Phocaeicola | 1.6057 |
| Bacteroides fluxus | Bacteroides | 1.5863 |
| Romboutsia timonensis | Romboutsia | 1.4866 |
| Bacteroides uniformis | Bacteroides | 1.2908 |
| Ruminococcus callidus | Ruminococcus | 1.2304 |
| Allofournierella massiliensis | Allofournierella | 1.1934 |
| Alistipes megaguti | Alistipes | 1.1134 |
| Phocaeicola dorei | Phocaeicola | 1.0418 |
| Bacteroides cellulosilyticus | Bacteroides | 1.0145 |
| Bacteroides eggerthii | Bacteroides | 0.9964 |
| Ruminococcus bromii | Ruminococcus | 0.8271 |
| Enterococcus cecorum | Enterococcus | 0.7735 |
| Blautia hansenii | Blautia | 0.7107 |
| Alistipes communis | Alistipes | 0.6164 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 0.5680 |
| Bacteroides fragilis | Bacteroides | 0.5574 |
| Sellimonas intestinalis | Sellimonas | 0.5497 |
| Dysosmobacter welbionis | Dysosmobacter | 0.5439 |
| Alistipes putredinis | Alistipes | 0.4325 |
| Bacteroides mediterraneensis | Bacteroides | 0.4315 |
| Alistipes dispar | Alistipes | 0.4236 |
| Romboutsia lituseburensis | Romboutsia | 0.4115 |
| Blautia glucerasea | Blautia | 0.3663 |
| Barnesiella intestinihominis | Barnesiella | 0.3407 |
| Negativibacillus massiliensis | Negativibacillus | 0.3021 |
| Agathobaculum desmolans | Agathobaculum | 0.2538 |
| Bacteroides caecicola | Bacteroides | 0.2490 |
| Helicobacter pullorum | Helicobacter | 0.2175 |
| Pseudoflavonifractor phocaeensis | Pseudoflavonifractor | 0.1571 |
Saved public metadata
{
"run_accession": "SRR27278238",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915801",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "16030",
"base_count": "23123009",
"fastq_bytes": "19690479",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/038/SRR27278238/SRR27278238_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3ec07c4bb43ace42b7f3b16b9a030fbd77717a6ce203317c58fda1d38972885b",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1482.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 16030,
"reads_skipped": 7668,
"elapsed_seconds": 1.2010589700000764,
"reads_submitted": 16030,
"reads_after_filter": 16030,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}