SRR27278235 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 14.6076 |
| Phocaeicola coprophilus | Phocaeicola | 9.7554 |
| Blautia glucerasea | Blautia | 8.2305 |
| Bacteroides eggerthii | Bacteroides | 8.0858 |
| Blautia producta | Blautia | 6.8344 |
| Barnesiella viscericola | Barnesiella | 5.2850 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 4.1864 |
| Bacteroides uniformis | Bacteroides | 3.6290 |
| Alistipes megaguti | Alistipes | 3.5619 |
| Romboutsia timonensis | Romboutsia | 2.6018 |
| Megasphaera stantonii | Megasphaera | 2.5452 |
| Phocaeicola coprocola | Phocaeicola | 2.3380 |
| Massilistercora timonensis | Massilistercora | 2.1975 |
| Bacteroides zoogleoformans | Bacteroides | 1.9916 |
| Bacteroides gallinaceus | Bacteroides | 1.9077 |
| Blautia hansenii | Blautia | 1.5693 |
| Sellimonas intestinalis | Sellimonas | 1.5299 |
| Negativibacillus massiliensis | Negativibacillus | 1.4829 |
| Neglectibacter timonensis | Neglectibacter | 1.4617 |
| Bacteroides mediterraneensis | Bacteroides | 1.4537 |
| Desulfovibrio piger | Desulfovibrio | 1.4325 |
| Alistipes putredinis | Alistipes | 1.2738 |
| Peptococcus niger | Peptococcus | 1.1961 |
| Bacteroides helcogenes | Bacteroides | 1.1808 |
| Alistipes communis | Alistipes | 1.1544 |
| Phocaeicola vulgatus | Phocaeicola | 1.0294 |
| Bacteroides cellulosilyticus | Bacteroides | 0.9371 |
| Phocaeicola barnesiae | Phocaeicola | 0.7585 |
| Phocaeicola salanitronis | Phocaeicola | 0.7432 |
| Romboutsia lituseburensis | Romboutsia | 0.7083 |
| Alistipes dispar | Alistipes | 0.7066 |
| Coprobacter fastidiosus | Coprobacter | 0.6259 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.5980 |
| Collinsella tanakaei | Collinsella | 0.5285 |
| Alistipes finegoldii | Alistipes | 0.4522 |
| Bacteroides fragilis | Bacteroides | 0.4073 |
| Coprobacter secundus | Coprobacter | 0.3894 |
| Phocaeicola dorei | Phocaeicola | 0.3167 |
| Pseudoflavonifractor phocaeensis | Pseudoflavonifractor | 0.3060 |
Saved public metadata
{
"run_accession": "SRR27278235",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915803",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "16147",
"base_count": "23486849",
"fastq_bytes": "20417849",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/035/SRR27278235/SRR27278235_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e96734ae286518e11cc2a8478eec43fde10cf59a2e0e9bcb98fa4b773e03ff02",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 16147,
"reads_skipped": 8794,
"elapsed_seconds": 1.2036560269998517,
"reads_submitted": 16147,
"reads_after_filter": 16147,
"adapter_scan": {
"sampled": 200,
"matched": 1,
"fraction": 0.005,
"adapters_found": {
"27F": 1
},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}