SRR27278232 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Romboutsia timonensis | Romboutsia | 14.3722 |
| Phocaeicola vulgatus | Phocaeicola | 11.6074 |
| Desulfovibrio piger | Desulfovibrio | 9.0742 |
| Faecalibacterium prausnitzii | Faecalibacterium | 7.1822 |
| Blautia producta | Blautia | 6.2318 |
| Megamonas hypermegale | Megamonas | 4.8013 |
| Romboutsia lituseburensis | Romboutsia | 4.5532 |
| Allofournierella massiliensis | Allofournierella | 4.4413 |
| Enorma phocaeensis | Enorma | 3.8326 |
| Bacteroides zoogleoformans | Bacteroides | 3.0282 |
| Collinsella aerofaciens | Collinsella | 2.2274 |
| Romboutsia ilealis | Romboutsia | 2.1396 |
| Blautia hansenii | Blautia | 2.0154 |
| Helicobacter pullorum | Helicobacter | 1.9756 |
| Alistipes megaguti | Alistipes | 1.7826 |
| Barnesiella viscericola | Barnesiella | 1.6081 |
| Parabacteroides distasonis | Parabacteroides | 1.5392 |
| Collinsella tanakaei | Collinsella | 1.3713 |
| Agathobaculum desmolans | Agathobaculum | 1.3554 |
| Bacteroides uniformis | Bacteroides | 1.3391 |
| Negativibacillus massiliensis | Negativibacillus | 1.3094 |
| Bacteroides eggerthii | Bacteroides | 1.3077 |
| Collinsella stercoris | Collinsella | 1.2079 |
| Alistipes putredinis | Alistipes | 1.2038 |
| Phocaeicola plebeius | Phocaeicola | 1.1485 |
| Peptococcus niger | Peptococcus | 0.9649 |
| Collinsella intestinalis | Collinsella | 0.8234 |
| Phocaeicola coprophilus | Phocaeicola | 0.8087 |
| Romboutsia sedimentorum | Romboutsia | 0.7360 |
| Gemmiger formicilis | Gemmiger | 0.7358 |
| Bacteroides helcogenes | Bacteroides | 0.7310 |
| Bacteroides ovatus | Bacteroides | 0.6727 |
| Bacteroides fragilis | Bacteroides | 0.6292 |
| Enorma timonensis | Enorma | 0.4846 |
| Sellimonas intestinalis | Sellimonas | 0.4824 |
| Escherichia coli | Escherichia | 0.2757 |
Saved public metadata
{
"run_accession": "SRR27278232",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915806",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "10158",
"base_count": "11423875",
"fastq_bytes": "10208701",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/032/SRR27278232/SRR27278232_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3cc6f13d04d1ae965c89acb4fcf04f59e7351c69223106ff77d1ad78e6891665",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1432.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 10158,
"reads_skipped": 5658,
"elapsed_seconds": 1.079287518000001,
"reads_submitted": 10158,
"reads_after_filter": 10158,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}