SRR27278231 · Gut microbiome
Metagenome or environmental sample from gut metagenome
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Barnesiella viscericola | Barnesiella | 13.7701 |
| Faecalibacterium prausnitzii | Faecalibacterium | 13.2276 |
| Blautia producta | Blautia | 8.1146 |
| Bacteroides eggerthii | Bacteroides | 4.5027 |
| Phascolarctobacterium faecium | Phascolarctobacterium | 4.3309 |
| Phocaeicola coprophilus | Phocaeicola | 4.2741 |
| Bacteroides gallinaceus | Bacteroides | 3.9908 |
| Blautia hansenii | Blautia | 3.9802 |
| Alistipes megaguti | Alistipes | 3.9246 |
| Romboutsia timonensis | Romboutsia | 3.5538 |
| Desulfovibrio piger | Desulfovibrio | 3.4425 |
| Neglectibacter timonensis | Neglectibacter | 2.5503 |
| Bacteroides uniformis | Bacteroides | 2.2591 |
| Allofournierella massiliensis | Allofournierella | 2.2590 |
| Enterococcus cecorum | Enterococcus | 1.7953 |
| Bacteroides zoogleoformans | Bacteroides | 1.6524 |
| Peptococcus niger | Peptococcus | 1.5547 |
| Sellimonas intestinalis | Sellimonas | 1.4992 |
| Megasphaera stantonii | Megasphaera | 1.4622 |
| Dysosmobacter welbionis | Dysosmobacter | 1.3528 |
| Alistipes communis | Alistipes | 1.2586 |
| Phocaeicola plebeius | Phocaeicola | 1.2447 |
| Alistipes putredinis | Alistipes | 1.1931 |
| Negativibacillus massiliensis | Negativibacillus | 1.1136 |
| Phocaeicola coprocola | Phocaeicola | 1.0899 |
| Phocaeicola salanitronis | Phocaeicola | 1.0893 |
| Bacteroides helcogenes | Bacteroides | 1.0228 |
| Massilistercora timonensis | Massilistercora | 1.0200 |
| Alistipes dispar | Alistipes | 0.8729 |
| Blautia glucerasea | Blautia | 0.7751 |
| Bacteroides mediterraneensis | Bacteroides | 0.7394 |
| Romboutsia lituseburensis | Romboutsia | 0.7031 |
| Christensenella minuta | Christensenella | 0.6858 |
| Staphylococcus kloosii | Staphylococcus | 0.6849 |
| Christensenella massiliensis | Christensenella | 0.6692 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.5738 |
| Phocaeicola vulgatus | Phocaeicola | 0.5111 |
| Alistipes finegoldii | Alistipes | 0.4873 |
| Blautia marasmi | Blautia | 0.4170 |
| Staphylococcus aureus | Staphylococcus | 0.3516 |
Saved public metadata
{
"run_accession": "SRR27278231",
"study_accession": "PRJNA1054336",
"sample_accession": "SAMN38915807",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "MinION",
"library_strategy": "AMPLICON",
"library_source": "OTHER",
"library_selection": "PCR",
"read_count": "12022",
"base_count": "17541592",
"fastq_bytes": "15365687",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/031/SRR27278231/SRR27278231_1.fastq.gz",
"sample_title": "Metagenome or environmental sample from gut metagenome",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "1bb3a10f62a12741fa2504bc669ad31ad67eb0504063c8f85749fac8052078e6",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1483.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 12022,
"reads_skipped": 6434,
"elapsed_seconds": 1.034181021999757,
"reads_submitted": 12022,
"reads_after_filter": 12022,
"adapter_scan": {
"sampled": 200,
"matched": 0,
"fraction": 0.0,
"adapters_found": {},
"should_trim": false
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}