SRR27205886 · Gut microbiome
Pre-Sham HY15
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Phocaeicola dorei | Phocaeicola | 28.9321 |
| Bacteroides uniformis | Bacteroides | 12.2102 |
| Faecalibacterium prausnitzii | Faecalibacterium | 11.3767 |
| Blautia producta | Blautia | 6.9167 |
| Blautia glucerasea | Blautia | 5.7268 |
| Collinsella aerofaciens | Collinsella | 5.4344 |
| Bacteroides ovatus | Bacteroides | 4.2772 |
| Dorea formicigenerans | Dorea | 2.8809 |
| Anaerostipes hadrus | Anaerostipes | 2.4880 |
| Agathobacter ruminis | Agathobacter | 1.8988 |
| Anaerobutyricum hallii | Anaerobutyricum | 1.6704 |
| Blautia hansenii | Blautia | 1.6065 |
| Phocaeicola vulgatus | Phocaeicola | 1.3320 |
| Bacteroides thetaiotaomicron | Bacteroides | 1.1661 |
| Bacteroides xylanisolvens | Bacteroides | 1.1562 |
| Bacteroides fragilis | Bacteroides | 1.1412 |
| Alistipes putredinis | Alistipes | 1.0517 |
| Bacteroides zoogleoformans | Bacteroides | 1.0258 |
| Bacteroides cellulosilyticus | Bacteroides | 0.8598 |
| Streptococcus salivarius | Streptococcus | 0.7826 |
| Parabacteroides distasonis | Parabacteroides | 0.7764 |
| Streptococcus parasanguinis | Streptococcus | 0.6971 |
| Anaerotignum lactatifermentans | Anaerotignum | 0.6521 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.5827 |
| Dialister invisus | Dialister | 0.5500 |
| Bacteroides rodentium | Bacteroides | 0.5463 |
| Agathobaculum desmolans | Agathobaculum | 0.4256 |
| Anaerotignum faecicola | Anaerotignum | 0.4018 |
| Alistipes finegoldii | Alistipes | 0.3278 |
| Blautia luti | Blautia | 0.3072 |
| Bacteroides intestinalis | Bacteroides | 0.2706 |
| Alistipes dispar | Alistipes | 0.2046 |
| Blautia marasmi | Blautia | 0.1770 |
| Bacteroides coprosuis | Bacteroides | 0.1465 |
Saved public metadata
{
"run_accession": "SRR27205886",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838671",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "60976",
"base_count": "90412021",
"fastq_bytes": "71145737",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/086/SRR27205886/SRR27205886_1.fastq.gz",
"sample_title": "Pre-Sham HY15",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "3c2abaa85256378857e231d42c7fd14990688a862ba93f6e746debb852b8ec4d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1490.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4573,
"elapsed_seconds": 1.6464387510000051,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 99,
"fraction": 0.495,
"adapters_found": {
"27F": 94,
"1492R_rc": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}