SRR27205882 · Gut microbiome
SRR27205882
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 14.7862 |
| Faecalibacterium prausnitzii | Faecalibacterium | 14.4400 |
| Streptococcus salivarius | Streptococcus | 10.9887 |
| Blautia producta | Blautia | 9.1326 |
| Limosilactobacillus reuteri | Limosilactobacillus | 7.7186 |
| Anaerostipes hadrus | Anaerostipes | 5.5520 |
| Collinsella aerofaciens | Collinsella | 4.4484 |
| Prevotella copri | Prevotella | 3.7777 |
| Streptococcus equinus | Streptococcus | 3.2180 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.6906 |
| Dialister hominis | Dialister | 2.3407 |
| Blautia hansenii | Blautia | 2.2816 |
| Streptococcus parasanguinis | Streptococcus | 2.0036 |
| Veillonella dispar | Veillonella | 1.6428 |
| Paraprevotella xylaniphila | Paraprevotella | 1.4556 |
| Streptococcus vestibularis | Streptococcus | 1.3570 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 1.2161 |
| Streptococcus thermophilus | Streptococcus | 1.1243 |
| Agathobacter ruminis | Agathobacter | 1.0081 |
| Dorea formicigenerans | Dorea | 0.9136 |
| Prevotella jejuni | Prevotella | 0.8561 |
| Agathobaculum desmolans | Agathobaculum | 0.6742 |
| Streptococcus gordonii | Streptococcus | 0.6655 |
| Blautia luti | Blautia | 0.5722 |
| Schaalia odontolytica | Schaalia | 0.4915 |
| Prevotella melaninogenica | Prevotella | 0.4459 |
| Veillonella parvula | Veillonella | 0.4265 |
| Prevotella oulorum | Prevotella | 0.4055 |
| Parabacteroides distasonis | Parabacteroides | 0.3780 |
| Streptococcus koreensis | Streptococcus | 0.3591 |
| Streptococcus anginosus | Streptococcus | 0.3129 |
| Prevotella scopos | Prevotella | 0.3085 |
| Phocaeicola vulgatus | Phocaeicola | 0.2654 |
| Streptococcus mitis | Streptococcus | 0.2583 |
| Anaerostipes butyraticus | Anaerostipes | 0.2392 |
| Streptococcus viridans | Streptococcus | 0.2354 |
| Phocaeicola dorei | Phocaeicola | 0.2353 |
| Dialister succinatiphilus | Dialister | 0.2274 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.2204 |
| Lactobacillus kefiranofaciens | Lactobacillus | 0.1764 |
| Streptococcus downei | Streptococcus | 0.1503 |
Saved public metadata
{
"run_accession": "SRR27205882",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838677",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "78863",
"base_count": "117517655",
"fastq_bytes": "93833534",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/082/SRR27205882/SRR27205882_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "a39b45877b58125959abc142786619b3427c59759b49fb84ac28937289a27053",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1494.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 3914,
"elapsed_seconds": 1.7870450060001986,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 88,
"fraction": 0.44,
"adapters_found": {
"27F": 86,
"1492R_rc": 2
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}