SRR27205881 · Gut microbiome
Post-Sham HY22
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 22.0910 |
| Blautia glucerasea | Blautia | 14.4518 |
| Bacteroides uniformis | Bacteroides | 11.8654 |
| Blautia producta | Blautia | 9.4816 |
| Bacteroides ovatus | Bacteroides | 8.1988 |
| Anaerostipes hadrus | Anaerostipes | 8.0329 |
| Anaerobutyricum hallii | Anaerobutyricum | 5.6740 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 4.1646 |
| Phocaeicola vulgatus | Phocaeicola | 3.8356 |
| Blautia hansenii | Blautia | 1.8663 |
| Dorea formicigenerans | Dorea | 1.2046 |
| Parabacteroides distasonis | Parabacteroides | 0.6600 |
| Escherichia coli | Escherichia | 0.6119 |
| Blautia luti | Blautia | 0.6010 |
| Bacteroides zoogleoformans | Bacteroides | 0.5993 |
| Bacteroides cellulosilyticus | Bacteroides | 0.5961 |
| Bacteroides xylanisolvens | Bacteroides | 0.5268 |
| Romboutsia timonensis | Romboutsia | 0.4844 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.4797 |
| Bacteroides fragilis | Bacteroides | 0.4482 |
| Alistipes putredinis | Alistipes | 0.4449 |
| Alistipes finegoldii | Alistipes | 0.4220 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.3697 |
| Alistipes onderdonkii | Alistipes | 0.3485 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.2979 |
| Alistipes ihumii | Alistipes | 0.2731 |
| Bacteroides rodentium | Bacteroides | 0.2729 |
| Agathobacter ruminis | Agathobacter | 0.2422 |
| Blautia marasmi | Blautia | 0.2011 |
| Gemmiger formicilis | Gemmiger | 0.1852 |
| Blautia faecis | Blautia | 0.1659 |
| Alistipes indistinctus | Alistipes | 0.1638 |
| Parabacteroides merdae | Parabacteroides | 0.1606 |
| Alistipes dispar | Alistipes | 0.1603 |
| Alistipes megaguti | Alistipes | 0.1501 |
| Blautia wexlerae | Blautia | 0.1352 |
| Phocaeicola dorei | Phocaeicola | 0.1325 |
Saved public metadata
{
"run_accession": "SRR27205881",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838684",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "55307",
"base_count": "82027617",
"fastq_bytes": "65140451",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/081/SRR27205881/SRR27205881_1.fastq.gz",
"sample_title": "Post-Sham HY22",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "2783a8b8194ef94bb8301bfde16feaa5d09773d055d35fd654304b6f7882ba45",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1489.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4198,
"elapsed_seconds": 1.7359985830000824,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 96,
"fraction": 0.48,
"adapters_found": {
"27F": 93,
"BC_FLANK": 2,
"1492R_rc": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}