SRR27205880 · Gut microbiome
Post-Hypoxia HY22
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia producta | Blautia | 21.7425 |
| Faecalibacterium prausnitzii | Faecalibacterium | 20.4769 |
| Blautia glucerasea | Blautia | 17.6045 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 9.1742 |
| Anaerobutyricum hallii | Anaerobutyricum | 7.0255 |
| Anaerostipes hadrus | Anaerostipes | 4.8499 |
| Blautia hansenii | Blautia | 4.2096 |
| Streptococcus thermophilus | Streptococcus | 1.5952 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 1.3283 |
| Eubacterium oxidoreducens | Eubacterium | 1.2642 |
| Blautia luti | Blautia | 1.2546 |
| Dorea formicigenerans | Dorea | 1.2186 |
| Phocaeicola vulgatus | Phocaeicola | 0.9027 |
| Bacteroides uniformis | Bacteroides | 0.8557 |
| Eubacterium ventriosum | Eubacterium | 0.7281 |
| Bacteroides ovatus | Bacteroides | 0.5922 |
| Blautia marasmi | Blautia | 0.5719 |
| Alistipes finegoldii | Alistipes | 0.5528 |
| Alistipes putredinis | Alistipes | 0.4169 |
| Ruminococcus champanellensis | Ruminococcus | 0.3892 |
| Streptococcus salivarius | Streptococcus | 0.2940 |
| Ruminococcus bromii | Ruminococcus | 0.2870 |
| Blautia faecis | Blautia | 0.2861 |
| Agathobaculum desmolans | Agathobaculum | 0.2837 |
| Eubacterium ruminantium | Eubacterium | 0.2837 |
| Bacteroides zoogleoformans | Bacteroides | 0.2783 |
| Alistipes ihumii | Alistipes | 0.2232 |
| Bacteroides cellulosilyticus | Bacteroides | 0.2141 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.1935 |
| Bacteroides fragilis | Bacteroides | 0.1883 |
| Bacteroides intestinalis | Bacteroides | 0.1824 |
| Allocoprococcus comes | Allocoprococcus | 0.1805 |
| Ruminococcus callidus | Ruminococcus | 0.1787 |
| Blautia wexlerae | Blautia | 0.1731 |
Saved public metadata
{
"run_accession": "SRR27205880",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838682",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "56823",
"base_count": "84256251",
"fastq_bytes": "65109792",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/080/SRR27205880/SRR27205880_1.fastq.gz",
"sample_title": "Post-Hypoxia HY22",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "e6bd4e2251e229ba9c0070cb10df393bcb5838cf38b949dceaaf2f81ac098707",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1488.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4398,
"elapsed_seconds": 1.7172602530001768,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 39,
"fraction": 0.195,
"adapters_found": {
"27F": 33,
"1492R_rc": 6
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}