SRR27205879 · Gut microbiome
SRR27205879
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 18.6560 |
| Blautia glucerasea | Blautia | 12.6650 |
| Blautia producta | Blautia | 9.5463 |
| Limosilactobacillus reuteri | Limosilactobacillus | 9.4575 |
| Anaerostipes hadrus | Anaerostipes | 6.8788 |
| Streptococcus parasanguinis | Streptococcus | 5.4367 |
| Streptococcus salivarius | Streptococcus | 4.7120 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 3.9322 |
| Prevotella copri | Prevotella | 3.1371 |
| Collinsella aerofaciens | Collinsella | 2.9580 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.6293 |
| Dialister hominis | Dialister | 2.2101 |
| Blautia hansenii | Blautia | 2.1823 |
| Limosilactobacillus mucosae | Limosilactobacillus | 1.6941 |
| Agathobacter ruminis | Agathobacter | 1.6306 |
| Streptococcus equinus | Streptococcus | 1.1394 |
| Streptococcus koreensis | Streptococcus | 1.0536 |
| Paraprevotella xylaniphila | Paraprevotella | 0.9843 |
| Dorea formicigenerans | Dorea | 0.9638 |
| Agathobaculum desmolans | Agathobaculum | 0.7681 |
| Prevotella jejuni | Prevotella | 0.7250 |
| Streptococcus thermophilus | Streptococcus | 0.7039 |
| Streptococcus vestibularis | Streptococcus | 0.5365 |
| Streptococcus gordonii | Streptococcus | 0.4682 |
| Slackia isoflavoniconvertens | Slackia | 0.4582 |
| Streptococcus mitis | Streptococcus | 0.4388 |
| Parabacteroides distasonis | Parabacteroides | 0.4380 |
| Prevotella melaninogenica | Prevotella | 0.4050 |
| Blautia luti | Blautia | 0.3866 |
| Streptococcus viridans | Streptococcus | 0.3720 |
| Streptococcus anginosus | Streptococcus | 0.3217 |
| Phocaeicola vulgatus | Phocaeicola | 0.3088 |
| Prevotella oulorum | Prevotella | 0.2535 |
| Streptococcus oralis | Streptococcus | 0.2533 |
| Phocaeicola dorei | Phocaeicola | 0.2251 |
| Streptococcus sanguinis | Streptococcus | 0.2250 |
| Prevotella stercorea | Prevotella | 0.2093 |
| Streptococcus pneumoniae | Streptococcus | 0.1918 |
| Blautia marasmi | Blautia | 0.1891 |
| Blautia wexlerae | Blautia | 0.1608 |
| Schaalia odontolytica | Schaalia | 0.0943 |
Saved public metadata
{
"run_accession": "SRR27205879",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838680",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "39533",
"base_count": "58837113",
"fastq_bytes": "47219612",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/079/SRR27205879/SRR27205879_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "f88dc1a4b4ff7b80a698ca1ec9fa1fdb5329181b0820325a1b7c1b82af882dac",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1493.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4926,
"elapsed_seconds": 1.8316850739993242,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 104,
"fraction": 0.52,
"adapters_found": {
"27F": 97,
"1492R_rc": 7
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}