SRR27205878 · Gut microbiome

SRR27205878

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Blautia glucerasea	Blautia	16.0556
Limosilactobacillus reuteri	Limosilactobacillus	11.9839
Faecalibacterium prausnitzii	Faecalibacterium	11.4645
Streptococcus salivarius	Streptococcus	11.2290
Blautia producta	Blautia	10.0931
Anaerostipes hadrus	Anaerostipes	8.4041
Prevotella copri	Prevotella	2.7924
Blautia hansenii	Blautia	2.4007
Anaerobutyricum hallii	Anaerobutyricum	2.3724
Streptococcus parasanguinis	Streptococcus	2.3061
Streptococcus equinus	Streptococcus	2.2600
Dialister hominis	Dialister	1.9630
Collinsella aerofaciens	Collinsella	1.9379
Mediterraneibacter glycyrrhizinilyticus	Mediterraneibacter	1.3760
Limosilactobacillus mucosae	Limosilactobacillus	1.2520
Streptococcus vestibularis	Streptococcus	1.0069
Dorea formicigenerans	Dorea	0.9627
Streptococcus thermophilus	Streptococcus	0.9134
Roseburia intestinalis	Roseburia	0.8531
Veillonella dispar	Veillonella	0.6625
Roseburia hominis	Roseburia	0.6601
Agathobaculum desmolans	Agathobaculum	0.6189
Prevotella jejuni	Prevotella	0.6103
Streptococcus koreensis	Streptococcus	0.4339
Prevotella stercorea	Prevotella	0.4321
Streptococcus viridans	Streptococcus	0.4275
Paraprevotella xylaniphila	Paraprevotella	0.4001
Blautia luti	Blautia	0.3949
Phocaeicola vulgatus	Phocaeicola	0.3876
Streptococcus gordonii	Streptococcus	0.3439
Streptococcus mitis	Streptococcus	0.3402
Prevotella melaninogenica	Prevotella	0.3164
Hungatella hathewayi	Hungatella	0.2998
Slackia isoflavoniconvertens	Slackia	0.2876
Phocaeicola dorei	Phocaeicola	0.2688
Prevotella oulorum	Prevotella	0.2497
Streptococcus sanguinis	Streptococcus	0.2342
Veillonella parvula	Veillonella	0.2001
Parabacteroides distasonis	Parabacteroides	0.1750
Blautia faecis	Blautia	0.1625
Blautia wexlerae	Blautia	0.1622
Lactobacillus gasseri	Lactobacillus	0.1563
Blautia marasmi	Blautia	0.1486

Saved public metadata

{
  "run_accession": "SRR27205878",
  "study_accession": "PRJNA1052613",
  "sample_accession": "SAMN38838678",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "GridION",
  "library_strategy": "AMPLICON",
  "library_source": "METAGENOMIC",
  "library_selection": "RT-PCR",
  "read_count": "49039",
  "base_count": "73156674",
  "fastq_bytes": "58083009",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/078/SRR27205878/SRR27205878_1.fastq.gz",
  "sample_title": "",
  "scientific_name": ""
}

Public files

SRR27205878_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "9d20cbab932f2b37047260bc614223b4296a48dafe77a2fd9623dff8b594d165",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1495.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 20000,
    "reads_skipped": 3795,
    "elapsed_seconds": 1.9351491009997517,
    "reads_submitted": 20000,
    "reads_after_filter": 20000,
    "adapter_scan": {
      "sampled": 200,
      "matched": 94,
      "fraction": 0.47,
      "adapters_found": {
        "27F": 86,
        "1492R_rc": 7,
        "BC_FLANK": 1
      },
      "should_trim": true
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}