SRR27205877 · Gut microbiome
SRR27205877
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 18.4670 |
| Faecalibacterium prausnitzii | Faecalibacterium | 18.3460 |
| Blautia producta | Blautia | 12.7989 |
| Limosilactobacillus reuteri | Limosilactobacillus | 9.6410 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 7.8429 |
| Anaerostipes hadrus | Anaerostipes | 6.7231 |
| Collinsella aerofaciens | Collinsella | 5.4929 |
| Anaerobutyricum hallii | Anaerobutyricum | 4.7395 |
| Blautia hansenii | Blautia | 2.7417 |
| Dorea formicigenerans | Dorea | 1.5982 |
| Agathobacter ruminis | Agathobacter | 1.4805 |
| Dialister hominis | Dialister | 1.3686 |
| Agathobaculum desmolans | Agathobaculum | 1.3075 |
| Streptococcus parasanguinis | Streptococcus | 1.0309 |
| Blautia luti | Blautia | 0.6386 |
| Lactococcus lactis | Lactococcus | 0.6295 |
| Prevotella copri | Prevotella | 0.5438 |
| Phocaeicola vulgatus | Phocaeicola | 0.5257 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.5131 |
| Phocaeicola dorei | Phocaeicola | 0.5120 |
| Streptococcus gordonii | Streptococcus | 0.4037 |
| Streptococcus koreensis | Streptococcus | 0.3726 |
| Slackia isoflavoniconvertens | Slackia | 0.3667 |
| Streptococcus anginosus | Streptococcus | 0.3666 |
| Parabacteroides distasonis | Parabacteroides | 0.3528 |
| Prevotella jejuni | Prevotella | 0.3417 |
| Blautia faecis | Blautia | 0.2141 |
| Blautia wexlerae | Blautia | 0.1938 |
| Blautia marasmi | Blautia | 0.1827 |
| Dialister succinatiphilus | Dialister | 0.1465 |
| Lactobacillus gasseri | Lactobacillus | 0.1176 |
Saved public metadata
{
"run_accession": "SRR27205877",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838679",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "46379",
"base_count": "68946270",
"fastq_bytes": "54410104",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/077/SRR27205877/SRR27205877_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b745edd1191b4babbb5fd748ffca6f988746ba2dd7e9d96def5f82291daf1cf1",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1491.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5326,
"elapsed_seconds": 1.624462431999973,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 96,
"fraction": 0.48,
"adapters_found": {
"27F": 91,
"BC_FLANK": 2,
"1492R_rc": 3
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}