SRR27205875 · Gut microbiome
Pre-Sham HY22
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Anaerostipes hadrus | Anaerostipes | 20.6204 |
| Blautia producta | Blautia | 18.5551 |
| Blautia glucerasea | Blautia | 17.2973 |
| Faecalibacterium prausnitzii | Faecalibacterium | 14.1268 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 7.4944 |
| Anaerobutyricum hallii | Anaerobutyricum | 6.7297 |
| Blautia hansenii | Blautia | 4.3480 |
| Dorea formicigenerans | Dorea | 1.3922 |
| Bacteroides ovatus | Bacteroides | 1.1383 |
| Phocaeicola vulgatus | Phocaeicola | 1.1098 |
| Blautia luti | Blautia | 0.7571 |
| Eubacterium oxidoreducens | Eubacterium | 0.7533 |
| Bacteroides uniformis | Bacteroides | 0.7488 |
| Streptococcus thermophilus | Streptococcus | 0.5729 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.4504 |
| Bacteroides cellulosilyticus | Bacteroides | 0.4284 |
| Eubacterium ventriosum | Eubacterium | 0.4198 |
| Blautia marasmi | Blautia | 0.3698 |
| Eubacterium ruminantium | Eubacterium | 0.3530 |
| Ruminococcus bromii | Ruminococcus | 0.3435 |
| Bacteroides fragilis | Bacteroides | 0.3187 |
| Ruminococcus champanellensis | Ruminococcus | 0.3063 |
| Parabacteroides distasonis | Parabacteroides | 0.2531 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.2121 |
| Ruminococcus callidus | Ruminococcus | 0.1861 |
| Enterobacter hormaechei | Enterobacter | 0.1799 |
| Blautia wexlerae | Blautia | 0.1607 |
| Blautia faecis | Blautia | 0.1534 |
| Bacteroides zoogleoformans | Bacteroides | 0.1406 |
| Acinetobacter johnsonii | Acinetobacter | 0.0799 |
Saved public metadata
{
"run_accession": "SRR27205875",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838683",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "54589",
"base_count": "81024617",
"fastq_bytes": "62427946",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/075/SRR27205875/SRR27205875_1.fastq.gz",
"sample_title": "Pre-Sham HY22",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "7c4def248396b269487aadc3223d28e56ec31a7ecab82034e1ea00123b1ee016",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1491.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4870,
"elapsed_seconds": 1.9896476330000041,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 109,
"fraction": 0.545,
"adapters_found": {
"27F": 105,
"BC_FLANK": 1,
"1492R_rc": 3
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}