SRR27205871 · Gut microbiome
SRR27205871
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Faecalibacterium prausnitzii | Faecalibacterium | 25.5830 |
| Blautia glucerasea | Blautia | 15.6788 |
| Blautia producta | Blautia | 11.9159 |
| Anaerostipes hadrus | Anaerostipes | 6.0889 |
| Holdemanella biformis | Holdemanella | 5.4982 |
| Ruminococcus bromii | Ruminococcus | 4.8979 |
| Anaerobutyricum hallii | Anaerobutyricum | 4.8149 |
| Ruminococcus callidus | Ruminococcus | 3.5481 |
| Hominimerdicola aceti | Hominimerdicola | 2.7493 |
| Ruminococcus champanellensis | Ruminococcus | 2.6079 |
| Blautia hansenii | Blautia | 2.1974 |
| Dorea formicigenerans | Dorea | 1.9260 |
| Agathobaculum desmolans | Agathobaculum | 1.7727 |
| Collinsella aerofaciens | Collinsella | 1.7394 |
| Agathobacter ruminis | Agathobacter | 1.6803 |
| Phocaeicola vulgatus | Phocaeicola | 1.3729 |
| Akkermansia muciniphila | Akkermansia | 1.1796 |
| Streptococcus salivarius | Streptococcus | 1.0964 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.5664 |
| Coprococcus eutactus | Coprococcus | 0.5392 |
| Blautia luti | Blautia | 0.4607 |
| Ruminococcus flavefaciens | Ruminococcus | 0.3519 |
| Streptococcus equinus | Streptococcus | 0.2794 |
| Gemmiger formicilis | Gemmiger | 0.2066 |
| Eshraghiella crossota | Eshraghiella | 0.1933 |
| Blautia marasmi | Blautia | 0.1928 |
| Anaerostipes butyraticus | Anaerostipes | 0.1923 |
| Streptococcus thermophilus | Streptococcus | 0.1904 |
| Blautia faecis | Blautia | 0.1729 |
| Veillonella dispar | Veillonella | 0.1599 |
| Intestinibacter bartlettii | Intestinibacter | 0.1466 |
Saved public metadata
{
"run_accession": "SRR27205871",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838647",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "109640",
"base_count": "162694415",
"fastq_bytes": "127513970",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/071/SRR27205871/SRR27205871_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "b50e93684e4ff18f322518613d42d334010fdd695ccbbb1e17c246d894f9657d",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1490.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4900,
"elapsed_seconds": 1.7790474480002558,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 102,
"fraction": 0.51,
"adapters_found": {
"27F": 97,
"1492R_rc": 4,
"BC_FLANK": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}