SRR27205868 · Gut microbiome

SRR27205868

complete

Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.

Open interactive sample report

Taxonomic abundances

Species	Genus	Abundance (%)
Faecalibacterium prausnitzii	Faecalibacterium	18.4014
Blautia glucerasea	Blautia	13.5167
Blautia producta	Blautia	9.2310
Holdemanella biformis	Holdemanella	8.9453
Akkermansia muciniphila	Akkermansia	7.1851
Anaerostipes hadrus	Anaerostipes	6.2621
Anaerobutyricum hallii	Anaerobutyricum	5.5113
Hominimerdicola aceti	Hominimerdicola	4.5349
Phocaeicola vulgatus	Phocaeicola	3.9466
Collinsella aerofaciens	Collinsella	2.6103
Mediterraneibacter glycyrrhizinilyticus	Mediterraneibacter	2.5475
Bacteroides uniformis	Bacteroides	1.9821
Terrisporobacter mayombei	Terrisporobacter	1.6633
Blautia hansenii	Blautia	1.5863
Ruminococcus champanellensis	Ruminococcus	1.2131
Anaerostipes butyraticus	Anaerostipes	0.8980
Dorea formicigenerans	Dorea	0.7545
Coprococcus eutactus	Coprococcus	0.7405
Alistipes onderdonkii	Alistipes	0.7124
Barnesiella viscericola	Barnesiella	0.6133
Terrisporobacter petrolearius	Terrisporobacter	0.5243
Ruminococcus callidus	Ruminococcus	0.5006
Hominimerdicola alba	Hominimerdicola	0.4726
Blautia luti	Blautia	0.4466
Bacteroides ovatus	Bacteroides	0.3886
Paraprevotella xylaniphila	Paraprevotella	0.3846
Fusicatenibacter saccharivorans	Fusicatenibacter	0.3671
Monoglobus pectinilyticus	Monoglobus	0.3329
Ruminococcus bromii	Ruminococcus	0.2879
Bacteroides caccae	Bacteroides	0.2821
Alistipes putredinis	Alistipes	0.2734
Blautia faecis	Blautia	0.2717
Bacteroides cellulosilyticus	Bacteroides	0.2652
Alistipes finegoldii	Alistipes	0.2514
Intestinibacter bartlettii	Intestinibacter	0.2459
Blautia marasmi	Blautia	0.2390
Eshraghiella crossota	Eshraghiella	0.2311
Phocaeicola dorei	Phocaeicola	0.2268
Bacteroides zoogleoformans	Bacteroides	0.2237
Bacteroides fragilis	Bacteroides	0.2113
Anaerostipes rhamnosivorans	Anaerostipes	0.1941
Gemmiger formicilis	Gemmiger	0.1903
Phocaeicola massiliensis	Phocaeicola	0.1767
Streptococcus salivarius	Streptococcus	0.1563

Saved public metadata

{
  "run_accession": "SRR27205868",
  "study_accession": "PRJNA1052613",
  "sample_accession": "SAMN38838648",
  "instrument_platform": "OXFORD_NANOPORE",
  "instrument_model": "GridION",
  "library_strategy": "AMPLICON",
  "library_source": "METAGENOMIC",
  "library_selection": "RT-PCR",
  "read_count": "88912",
  "base_count": "131723372",
  "fastq_bytes": "107713597",
  "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/068/SRR27205868/SRR27205868_1.fastq.gz",
  "sample_title": "",
  "scientific_name": ""
}

Public files

SRR27205868_1.fastq.gz

Analysis provenance

{
  "marker": "16S",
  "pipeline": "Archaions v18.8",
  "cohort": "Gut, mixed hosts; not curated as a human-only cohort",
  "execution_state": "paused_by_user",
  "sample_state": "complete",
  "read_sampling": "First available reads; not random subsampling",
  "input_sha256": "55e07a935e0f017f92a85ee075abebff2f0d1b3d6f8ff9f69c9cbd813bb23142",
  "length_window_bp": [
    1200,
    2000
  ],
  "median_read_length": 1487.0,
  "quality_scores": "No measured quality scores in fetched FASTA",
  "classifier_stats": {
    "marker": "16s",
    "pipeline": "v18.8",
    "gpu": "RTX-PRO-6000",
    "input_path": "volume-fastq-gz",
    "reads_in": 20000,
    "reads_skipped": 5177,
    "elapsed_seconds": 2.7701007739999994,
    "reads_submitted": 20000,
    "reads_after_filter": 20000,
    "adapter_scan": {
      "sampled": 200,
      "matched": 102,
      "fraction": 0.51,
      "adapters_found": {
        "1492R_rc": 6,
        "27F": 96
      },
      "should_trim": true
    },
    "porechop_ran": false,
    "porechop_reason": "fast-path: no adapter trimming required"
  },
  "metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}