SRR27205865 · Gut microbiome
SRR27205865
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus reuteri | Limosilactobacillus | 41.8089 |
| Faecalibacterium prausnitzii | Faecalibacterium | 11.5791 |
| Blautia glucerasea | Blautia | 8.7419 |
| Blautia producta | Blautia | 8.1781 |
| Klebsiella pneumoniae | Klebsiella | 4.6905 |
| Roseburia hominis | Roseburia | 4.0669 |
| Anaerobutyricum hallii | Anaerobutyricum | 3.0131 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 2.5457 |
| Anaerostipes hadrus | Anaerostipes | 2.3339 |
| Escherichia coli | Escherichia | 1.7234 |
| Blautia hansenii | Blautia | 1.6103 |
| Streptococcus salivarius | Streptococcus | 1.4933 |
| Dorea formicigenerans | Dorea | 1.0462 |
| Ruminococcus callidus | Ruminococcus | 0.9885 |
| Roseburia intestinalis | Roseburia | 0.9586 |
| Collinsella aerofaciens | Collinsella | 0.8689 |
| Massilistercora timonensis | Massilistercora | 0.8341 |
| Ruminococcus champanellensis | Ruminococcus | 0.6338 |
| Eshraghiella crossota | Eshraghiella | 0.4018 |
| Blautia luti | Blautia | 0.3592 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.3360 |
| Ruminococcus bromii | Ruminococcus | 0.3208 |
| Klebsiella variicola | Klebsiella | 0.2839 |
| Bacteroides cellulosilyticus | Bacteroides | 0.2189 |
| Bacteroides uniformis | Bacteroides | 0.2124 |
| Streptococcus equinus | Streptococcus | 0.1990 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.1966 |
| Streptococcus parasanguinis | Streptococcus | 0.1909 |
| Streptococcus thermophilus | Streptococcus | 0.1654 |
Saved public metadata
{
"run_accession": "SRR27205865",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838659",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "113265",
"base_count": "169604028",
"fastq_bytes": "132128759",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/065/SRR27205865/SRR27205865_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "c21873f28a0b65becf088be0b004854e9e2e338e3c91288c9be20cb8785846dc",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1497.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4076,
"elapsed_seconds": 2.212818363000224,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 110,
"fraction": 0.55,
"adapters_found": {
"27F": 98,
"BC_FLANK": 11,
"1492R_rc": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}