SRR27205864 · Gut microbiome
SRR27205864
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 33.8897 |
| Blautia producta | Blautia | 11.8219 |
| Ruminococcus callidus | Ruminococcus | 10.4976 |
| Ruminococcus champanellensis | Ruminococcus | 10.0412 |
| Akkermansia muciniphila | Akkermansia | 6.8432 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 5.1750 |
| Anaerobutyricum hallii | Anaerobutyricum | 4.2931 |
| Blautia hansenii | Blautia | 2.7151 |
| Collinsella aerofaciens | Collinsella | 2.4268 |
| Gemmiger formicilis | Gemmiger | 2.2609 |
| Ruminococcus flavefaciens | Ruminococcus | 1.7150 |
| Subdoligranulum variabile | Subdoligranulum | 1.1169 |
| Blautia luti | Blautia | 1.0332 |
| Ruminococcus bromii | Ruminococcus | 0.9350 |
| Clostridium ramosum | Clostridium | 0.8251 |
| Bacteroides ovatus | Bacteroides | 0.8017 |
| Escherichia coli | Escherichia | 0.7657 |
| Clostridium phytofermentans | Clostridium | 0.5023 |
| Blautia wexlerae | Blautia | 0.4837 |
| Collinsella intestinalis | Collinsella | 0.4681 |
| Clostridium botulinum | Clostridium | 0.3216 |
| Blautia marasmi | Blautia | 0.2321 |
| Eshraghiella crossota | Eshraghiella | 0.2103 |
| Floricoccus tropicus | Floricoccus | 0.2043 |
| Bacteroides cellulosilyticus | Bacteroides | 0.1616 |
| Blautia faecis | Blautia | 0.1338 |
| Collinsella stercoris | Collinsella | 0.1247 |
Saved public metadata
{
"run_accession": "SRR27205864",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838657",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "85459",
"base_count": "126793544",
"fastq_bytes": "97522726",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/064/SRR27205864/SRR27205864_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "f30bb4fee2887cc169145cf28fc0f1a09e621e883d36583e6145b2739f33f3df",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1490.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 3740,
"elapsed_seconds": 1.8404312650000065,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 98,
"fraction": 0.49,
"adapters_found": {
"27F": 93,
"1492R_rc": 5
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}