SRR27205863 · Gut microbiome
Pre-Hypoxia HY12
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 23.7126 |
| Ruminococcus callidus | Ruminococcus | 13.4066 |
| Ruminococcus champanellensis | Ruminococcus | 12.5650 |
| Blautia producta | Blautia | 9.7770 |
| Akkermansia muciniphila | Akkermansia | 8.5122 |
| Collinsella aerofaciens | Collinsella | 6.5706 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 3.1071 |
| Bacteroides cellulosilyticus | Bacteroides | 2.7692 |
| Ruminococcus flavefaciens | Ruminococcus | 2.1934 |
| Blautia hansenii | Blautia | 1.9838 |
| Phocaeicola dorei | Phocaeicola | 1.5181 |
| Clostridium ramosum | Clostridium | 1.4818 |
| Ruminococcus bromii | Ruminococcus | 1.2015 |
| Bacteroides uniformis | Bacteroides | 1.1368 |
| Bacteroides ovatus | Bacteroides | 1.0895 |
| Blautia luti | Blautia | 0.9352 |
| Clostridium phytofermentans | Clostridium | 0.6901 |
| Collinsella intestinalis | Collinsella | 0.6292 |
| Corynebacterium jeikeium | Corynebacterium | 0.5484 |
| Eubacterium oxidoreducens | Eubacterium | 0.5312 |
| Eubacterium limosum | Eubacterium | 0.5051 |
| Clostridium botulinum | Clostridium | 0.4943 |
| Parabacteroides distasonis | Parabacteroides | 0.4872 |
| Eshraghiella crossota | Eshraghiella | 0.4534 |
| Ihubacter massiliensis | Ihubacter | 0.4127 |
| Eubacterium ruminantium | Eubacterium | 0.3253 |
| Floricoccus tropicus | Floricoccus | 0.2931 |
| Blautia wexlerae | Blautia | 0.2594 |
| Gemmiger formicilis | Gemmiger | 0.2504 |
| Parabacteroides merdae | Parabacteroides | 0.2504 |
| Bacteroides thetaiotaomicron | Bacteroides | 0.2393 |
| Corynebacterium lactis | Corynebacterium | 0.2230 |
| Bacteroides caccae | Bacteroides | 0.2164 |
| Bacteroides fragilis | Bacteroides | 0.2099 |
| Collinsella stercoris | Collinsella | 0.2025 |
| Blautia faecis | Blautia | 0.1829 |
| Bacteroides zoogleoformans | Bacteroides | 0.1758 |
| Eubacterium callanderi | Eubacterium | 0.1744 |
| Floricoccus penangensis | Floricoccus | 0.1432 |
| Clostridium merdae | Clostridium | 0.1422 |
Saved public metadata
{
"run_accession": "SRR27205863",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838655",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "70326",
"base_count": "104199169",
"fastq_bytes": "82442590",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/063/SRR27205863/SRR27205863_1.fastq.gz",
"sample_title": "Pre-Hypoxia HY12",
"scientific_name": "gut metagenome"
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "5d1a03b54eee72293dfa2de7ad71e8f036fa056bd837bfbb184c5ce0378be3c5",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1489.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5098,
"elapsed_seconds": 1.714524234999999,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 101,
"fraction": 0.505,
"adapters_found": {
"27F": 94,
"1492R_rc": 5,
"BC_FLANK": 2
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}