SRR27205861 · Gut microbiome
SRR27205861
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 14.6252 |
| Streptococcus parasanguinis | Streptococcus | 12.1183 |
| Blautia producta | Blautia | 10.2939 |
| Limosilactobacillus reuteri | Limosilactobacillus | 10.2145 |
| Faecalibacterium prausnitzii | Faecalibacterium | 7.8366 |
| Collinsella aerofaciens | Collinsella | 6.0883 |
| Anaerostipes hadrus | Anaerostipes | 5.4176 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 4.8526 |
| Anaerobutyricum hallii | Anaerobutyricum | 4.3324 |
| Streptococcus salivarius | Streptococcus | 2.4032 |
| Blautia hansenii | Blautia | 1.9473 |
| Streptococcus koreensis | Streptococcus | 1.6730 |
| Roseburia hominis | Roseburia | 1.6256 |
| Streptococcus gordonii | Streptococcus | 1.6059 |
| Veillonella dispar | Veillonella | 1.5102 |
| Streptococcus viridans | Streptococcus | 1.4691 |
| Dorea formicigenerans | Dorea | 1.4132 |
| Agathobaculum desmolans | Agathobaculum | 1.2675 |
| Dialister hominis | Dialister | 1.1279 |
| Streptococcus mitis | Streptococcus | 0.9039 |
| Streptococcus oralis | Streptococcus | 0.7516 |
| Slackia isoflavoniconvertens | Slackia | 0.7256 |
| Blautia luti | Blautia | 0.6625 |
| Limosilactobacillus mucosae | Limosilactobacillus | 0.6372 |
| Streptococcus anginosus | Streptococcus | 0.5859 |
| Roseburia intestinalis | Roseburia | 0.5272 |
| Streptococcus equinus | Streptococcus | 0.4855 |
| Rothia mucilaginosa | Rothia | 0.4732 |
| Roseburia inulinivorans | Roseburia | 0.4731 |
| Streptococcus vestibularis | Streptococcus | 0.3584 |
| Veillonella parvula | Veillonella | 0.3335 |
| Streptococcus sanguinis | Streptococcus | 0.2488 |
| Streptococcus pneumoniae | Streptococcus | 0.2199 |
| Streptococcus thermophilus | Streptococcus | 0.2119 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.2115 |
| Blautia marasmi | Blautia | 0.1921 |
| Streptococcus marmotae | Streptococcus | 0.1760 |
Saved public metadata
{
"run_accession": "SRR27205861",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838653",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "69945",
"base_count": "104191021",
"fastq_bytes": "82391903",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/061/SRR27205861/SRR27205861_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "18928b0f39e445a93b960d48ecd6bbceca95a97e131e1332ec006d857a264b27",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1492.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 3983,
"elapsed_seconds": 1.980098752999993,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 51,
"fraction": 0.255,
"adapters_found": {
"27F": 43,
"1492R_rc": 8
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}