SRR27205860 · Gut microbiome
SRR27205860
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Prevotella copri | Prevotella | 29.8014 |
| Faecalibacterium prausnitzii | Faecalibacterium | 17.4625 |
| Blautia producta | Blautia | 7.1258 |
| Blautia glucerasea | Blautia | 7.0066 |
| Prevotella jejuni | Prevotella | 4.7195 |
| Phocaeicola vulgatus | Phocaeicola | 3.9152 |
| Dialister invisus | Dialister | 3.8820 |
| Anaerostipes hadrus | Anaerostipes | 3.4410 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 2.6157 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.5989 |
| Prevotella melaninogenica | Prevotella | 1.7571 |
| Phocaeicola massiliensis | Phocaeicola | 1.4891 |
| Ruminococcus champanellensis | Ruminococcus | 1.4464 |
| Blautia hansenii | Blautia | 1.1665 |
| Ruminococcus bromii | Ruminococcus | 1.1521 |
| Anaerostipes butyraticus | Anaerostipes | 1.0489 |
| Collinsella aerofaciens | Collinsella | 0.9702 |
| Prevotella oulorum | Prevotella | 0.9652 |
| Dorea formicigenerans | Dorea | 0.8994 |
| Coprococcus eutactus | Coprococcus | 0.7847 |
| Ruminococcus callidus | Ruminococcus | 0.7540 |
| Prevotella veroralis | Prevotella | 0.7286 |
| Alistipes putredinis | Alistipes | 0.5068 |
| Dialister hominis | Dialister | 0.4745 |
| Blautia luti | Blautia | 0.4248 |
| Barnesiella viscericola | Barnesiella | 0.4107 |
| Alistipes finegoldii | Alistipes | 0.3929 |
| Agathobaculum desmolans | Agathobaculum | 0.3612 |
| Agathobacter ruminis | Agathobacter | 0.3116 |
| Prevotella brevis | Prevotella | 0.2904 |
| Fusicatenibacter saccharivorans | Fusicatenibacter | 0.2902 |
| Prevotella oris | Prevotella | 0.2695 |
| Phocaeicola dorei | Phocaeicola | 0.1897 |
| Prevotella heparinolytica | Prevotella | 0.1838 |
| Prevotella nigrescens | Prevotella | 0.1629 |
Saved public metadata
{
"run_accession": "SRR27205860",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838637",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "61858",
"base_count": "91780415",
"fastq_bytes": "73202358",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/060/SRR27205860/SRR27205860_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "455968b717c173b35ee06d56b05c58af6207c4b6071490ddfdbad0e6d45486f7",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1490.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5764,
"elapsed_seconds": 1.6665587160000541,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 105,
"fraction": 0.525,
"adapters_found": {
"27F": 97,
"1492R_rc": 8
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}