SRR27205859 · Gut microbiome
SRR27205859
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 30.3279 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 15.5993 |
| Blautia producta | Blautia | 14.8300 |
| Escherichia coli | Escherichia | 7.9590 |
| Faecalimonas umbilicata | Faecalimonas | 5.3399 |
| Collinsella aerofaciens | Collinsella | 5.0813 |
| Akkermansia muciniphila | Akkermansia | 2.8792 |
| Blautia hansenii | Blautia | 2.8467 |
| Collinsella intestinalis | Collinsella | 2.7189 |
| Clostridium ramosum | Clostridium | 1.7205 |
| Faecalibacterium prausnitzii | Faecalibacterium | 1.5332 |
| Eggerthella lenta | Eggerthella | 1.0709 |
| Faecalimonas nexilis | Faecalimonas | 0.9230 |
| Blautia luti | Blautia | 0.8544 |
| Phocaeicola dorei | Phocaeicola | 0.8251 |
| Clostridium phytofermentans | Clostridium | 0.7665 |
| Bacteroides uniformis | Bacteroides | 0.5735 |
| Ruminococcus champanellensis | Ruminococcus | 0.5604 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.5403 |
| Eshraghiella crossota | Eshraghiella | 0.3886 |
| Ruminococcus callidus | Ruminococcus | 0.3803 |
| Clostridium botulinum | Clostridium | 0.3581 |
| Bacteroides ovatus | Bacteroides | 0.3374 |
| Collinsella stercoris | Collinsella | 0.2815 |
| Blautia wexlerae | Blautia | 0.2407 |
| Blautia marasmi | Blautia | 0.2209 |
| Erysipelothrix larvae | Erysipelothrix | 0.2021 |
| Erysipelothrix rhusiopathiae | Erysipelothrix | 0.1724 |
| Bacteroides caccae | Bacteroides | 0.1717 |
| Parabacteroides distasonis | Parabacteroides | 0.1697 |
| Shigella boydii | Shigella | 0.1266 |
Saved public metadata
{
"run_accession": "SRR27205859",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838656",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "68690",
"base_count": "101998162",
"fastq_bytes": "78705099",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/059/SRR27205859/SRR27205859_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "70fafd5954eddf267eed181a5360934b437d2fbae834dae914f7fbf142ce2069",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1491.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 2778,
"elapsed_seconds": 2.802174258999912,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 110,
"fraction": 0.55,
"adapters_found": {
"27F": 99,
"1492R_rc": 2,
"BC_FLANK": 9
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}