SRR27205858 · Gut microbiome
SRR27205858
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Blautia glucerasea | Blautia | 17.6756 |
| Ruminococcus callidus | Ruminococcus | 16.5854 |
| Ruminococcus champanellensis | Ruminococcus | 15.6951 |
| Blautia producta | Blautia | 11.4844 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 9.7296 |
| Akkermansia muciniphila | Akkermansia | 6.8010 |
| Anaerobutyricum hallii | Anaerobutyricum | 2.8937 |
| Ruminococcus flavefaciens | Ruminococcus | 2.5414 |
| Blautia hansenii | Blautia | 2.3914 |
| Bacteroides ovatus | Bacteroides | 1.9599 |
| Clostridium ramosum | Clostridium | 1.9580 |
| Bacteroides cellulosilyticus | Bacteroides | 1.8151 |
| Ruminococcus bromii | Ruminococcus | 1.4185 |
| Clostridium phytofermentans | Clostridium | 1.1297 |
| Collinsella aerofaciens | Collinsella | 1.0940 |
| Escherichia coli | Escherichia | 1.0243 |
| Bacteroides uniformis | Bacteroides | 0.6217 |
| Ihubacter massiliensis | Ihubacter | 0.3972 |
| Floricoccus tropicus | Floricoccus | 0.3767 |
| Clostridium botulinum | Clostridium | 0.3484 |
| Erysipelothrix rhusiopathiae | Erysipelothrix | 0.2999 |
| Blautia luti | Blautia | 0.2933 |
| Erysipelothrix larvae | Erysipelothrix | 0.2785 |
| Eshraghiella crossota | Eshraghiella | 0.2728 |
| Blautia marasmi | Blautia | 0.2629 |
| Collinsella intestinalis | Collinsella | 0.2578 |
| Gemmiger formicilis | Gemmiger | 0.2160 |
| Blautia faecis | Blautia | 0.1774 |
Saved public metadata
{
"run_accession": "SRR27205858",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838658",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "101403",
"base_count": "150524012",
"fastq_bytes": "117206985",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/058/SRR27205858/SRR27205858_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "27223fcbdde063dfd0534f985bbc8a810a6fa2ebf082f10913fcbdd7a7291e8f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1490.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 5572,
"elapsed_seconds": 1.9689292440000372,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 113,
"fraction": 0.565,
"adapters_found": {
"27F": 108,
"BC_FLANK": 2,
"1492R_rc": 3
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}