SRR27205857 · Gut microbiome
SRR27205857
complete
Gut analysis is paused. Unfinished samples are not negative results. This is a mixed-host collection, not a curated human-only cohort.
Open interactive sample report
Taxonomic abundances
| Species | Genus | Abundance (%) |
|---|---|---|
| Limosilactobacillus reuteri | Limosilactobacillus | 55.2441 |
| Enterococcus faecium | Enterococcus | 7.9112 |
| Neglectibacter timonensis | Neglectibacter | 4.2056 |
| Blautia producta | Blautia | 4.0988 |
| Phocaeicola dorei | Phocaeicola | 3.4063 |
| Massilistercora timonensis | Massilistercora | 2.9137 |
| Mediterraneibacter glycyrrhizinilyticus | Mediterraneibacter | 2.7161 |
| Bacteroides fragilis | Bacteroides | 2.6729 |
| Collinsella aerofaciens | Collinsella | 2.5779 |
| Blautia glucerasea | Blautia | 2.4281 |
| Akkermansia muciniphila | Akkermansia | 1.6054 |
| Anaerostipes hadrus | Anaerostipes | 1.4372 |
| Gemmiger formicilis | Gemmiger | 1.0831 |
| Anaeromassilibacillus senegalensis | Anaeromassilibacillus | 0.9238 |
| Streptococcus salivarius | Streptococcus | 0.8459 |
| Phocaeicola vulgatus | Phocaeicola | 0.7018 |
| Christensenella minuta | Christensenella | 0.6848 |
| Enterococcus hirae | Enterococcus | 0.6491 |
| Anaerobutyricum hallii | Anaerobutyricum | 0.6046 |
| Blautia hansenii | Blautia | 0.4625 |
| Subdoligranulum variabile | Subdoligranulum | 0.4290 |
| Bacteroides uniformis | Bacteroides | 0.3913 |
| Ruminococcus champanellensis | Ruminococcus | 0.3730 |
| Eshraghiella crossota | Eshraghiella | 0.3464 |
| Christensenella massiliensis | Christensenella | 0.3143 |
| Streptococcus thermophilus | Streptococcus | 0.2497 |
| Limosilactobacillus frumenti | Limosilactobacillus | 0.2008 |
| Streptococcus parasanguinis | Streptococcus | 0.1998 |
| Streptococcus equinus | Streptococcus | 0.1829 |
| Bacteroides zoogleoformans | Bacteroides | 0.1399 |
Saved public metadata
{
"run_accession": "SRR27205857",
"study_accession": "PRJNA1052613",
"sample_accession": "SAMN38838660",
"instrument_platform": "OXFORD_NANOPORE",
"instrument_model": "GridION",
"library_strategy": "AMPLICON",
"library_source": "METAGENOMIC",
"library_selection": "RT-PCR",
"read_count": "90889",
"base_count": "136643549",
"fastq_bytes": "106163822",
"fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/SRR272/057/SRR27205857/SRR27205857_1.fastq.gz",
"sample_title": "",
"scientific_name": ""
}Public files
Analysis provenance
{
"marker": "16S",
"pipeline": "Archaions v18.8",
"cohort": "Gut, mixed hosts; not curated as a human-only cohort",
"execution_state": "paused_by_user",
"sample_state": "complete",
"read_sampling": "First available reads; not random subsampling",
"input_sha256": "774c3e40044ee13dab3a250f2dba2849a51494f97c5dcc4fea2902e6704a657f",
"length_window_bp": [
1200,
2000
],
"median_read_length": 1508.0,
"quality_scores": "No measured quality scores in fetched FASTA",
"classifier_stats": {
"marker": "16s",
"pipeline": "v18.8",
"gpu": "RTX-PRO-6000",
"input_path": "volume-fastq-gz",
"reads_in": 20000,
"reads_skipped": 4768,
"elapsed_seconds": 1.9140405609998652,
"reads_submitted": 20000,
"reads_after_filter": 20000,
"adapter_scan": {
"sampled": 200,
"matched": 110,
"fraction": 0.55,
"adapters_found": {
"27F": 103,
"1492R_rc": 6,
"BC_FLANK": 1
},
"should_trim": true
},
"porechop_ran": false,
"porechop_reason": "fast-path: no adapter trimming required"
},
"metadata_coverage": "Saved ENA run fields only. BioSample attributes, study abstracts and file MD5s have not been fetched for this panel."
}